PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087395.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 425aa MW: 48538.4 Da PI: 6.4674

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087395.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	302	324	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+ +F+++ ++ H +H XP_010087395.1 302 YTCPRCKGVFTTSQTFAAHVGSH 324 9******************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.829	302	329	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	304	324	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MALSFNPDSY SSLGLHNQPI NGQFYSGVVL GDHTFENVFI GSQQPNRLGL HQSNQFISQL 60 ITDGNPTTHQ TTFSSQEAHI SQRNTCLVPQ RIQLVETVNI DYFPSQNQAI SSVGPLGGQV 120 CVTEVVRTRE IVRTQLINSA STRDRFLVPN NHGYNSWIND QGQTHLQNQA NHSTFTETQP 180 FIDAYCPNTI TQSSSHCFHN TKYEEFNTHV QESNYIIGDN TSSDPQPLSV YFPHETKRPI 240 PTDNHDFYES RDFPFTEYCS RYNRVFHDQG ENNISDQDDD DEDNFMGDGR THSLPYKKYG 300 PYTCPRCKGV FTTSQTFAAH VGSHYKSESA EERRKRHLAK YGKKHLRLVK SRNEVNIVPY 360 KPHFNEPVAL DRHNKKNEVK TIGSEDQESN KSTGKEILVT LSFRGEKFEG LFDVPIKEEP 420 MEMIS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MALSFNPDSY SSLGLHNQPI NGQFYSGVVL GDHTFENVFI GSQQPNRLGL HQSNQFISQL  60
ITDGNPTTHQ TTFSSQEAHI SQRNTCLVPQ RIQLVETVNI DYFPSQNQAI SSVGPLGGQV  120
CVTEVVRTRE IVRTQLINSA STRDRFLVPN NHGYNSWIND QGQTHLQNQA NHSTFTETQP  180
FIDAYCPNTI TQSSSHCFHN TKYEEFNTHV QESNYIIGDN TSSDPQPLSV YFPHETKRPI  240
PTDNHDFYES RDFPFTEYCS RYNRVFHDQG ENNISDQDDD DEDNFMGDGR THSLPYKKYG  300
PYTCPRCKGV FTTSQTFAAH VGSHYKSESA EERRKRHLAK YGKKHLRLVK SRNEVNIVPY  360
KPHFNEPVAL DRHNKKNEVK TIGSEDQESN KSTGKEILVT LSFRGEKFEG LFDVPIKEEP  420
MEMIS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00264	DAP	Transfer from AT2G15740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087395.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9QD61	0.0	W9QD61_9ROSA; Uncharacterized protein
STRING	XP_010087395.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18940	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	9e-24	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	21401391