PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087406.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Protein Properties

Length: 128aa MW: 14695.3 Da PI: 11.3432

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087406.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.5	8.5e-12	6	86	1	80
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 f+k l++ dv ++ l++p k +++ + ++ + l+++d++g W++ + +rkk+g vl++ W +Fv ++gL gD v XP_010087406.1 6 FQKSLKKTDVASR--LSFPSKSIKNLpgfE--GRNVVHLRVMDKRGSPWRFSCYIRKKGGFrkPVLSGDWHRFVVSKGLSIGDEV 86 8899988888875..9*****6669663..346678***********6677776688*****************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.5E-15	4	93	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.515	4	105	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.92E-11	4	89	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.67E-13	5	91	No hit	No description
SMART	SM01019	0.0069	6	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-9	6	86	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MAVMIFQKSL KKTDVASRLS FPSKSIKNLP GFEGRNVVHL RVMDKRGSPW RFSCYIRKKG 60 GFRKPVLSGD WHRFVVSKGL SIGDEVRLFK EIDQATGALL HYRVEVTKFN QMRLFGVSIE 120 HAPTIVRM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087406.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9QYE3	3e-89	W9QYE3_9ROSA; Uncharacterized protein
STRING	XP_010087406.1	5e-90	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78

Link Out ? help Back to Top
Entrez Gene	21401402