PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087462.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family FAR1
Protein Properties Length: 789aa    MW: 90634 Da    PI: 8.4521
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087462.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.92.6e-2662148191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++++gkw+v+ +++eHnHel p
  XP_010087462.1  62 SFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYVYCFVKEHNHELLP 148
                     5****************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-2462148IPR004330FAR1 DNA binding domain
PfamPF105511.8E-28261354IPR018289MULE transposase domain
PROSITE profilePS509669.668541577IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7547575IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-6552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MFTHHMKRSK PVVSGIGSLV HGRYKLDLNI PTRMMDSSAI MGNPIIEPHD EMEFESHEAA  60
YSFYKEYAKS AGFGTAKLSS RRSRASKEFI DAKFSCIRYG NKQQSDDAIN PRPSPKIGCK  120
ASMHVKRRQN GKWYVYCFVK EHNHELLPAQ AHFFRSHRNA GPLKNDVRIR RRKNLAAVSK  180
LFSAYQNIDC LENNLRNQHD KGRSLVLEPG DAQLLLEYFM QMQEENPKFF YAVDLNEEHR  240
LRNVFWVDAK GMEDYSNFND VISFDTTYFS NKYKIPLVLF IGVNHHIQPA LLGCALIADE  300
TVYTFVWLMQ TWLVAMGEQA PRVILTDQNN AIKAAIAAIF PSTRHCFCLW QVMEKMPRQL  360
QFLSMWQDTF MEKFNKCVFK SWSVEQFEKR WWKLIDRFNL RQVGWIQSLY EDRMHWVPTF  420
MRDISFAGLS RTSRSESLNS LFDKYVQGET SLRDFMERYR VILEDRYEDD AKANFDAWHE  480
TPELKSPSPF EKQMSLVYTD EVFKKFQVEV LGAAACHLKK ENEDETSTTY TVKDFEDNQN  540
YIVEWKESKS DIYCLCQSFE YKGYLCRHAI VVLQMSGVFS IPPKYVLQRW TNSAMSRHSI  600
GEKLDDVQHK VRRYNDLCRR AIILGEEGSL SQESYNVALS AIKEALKQCA NLSNSAENNA  660
RPNSSAVGGV CPIEEENQCS NASNFGTSGP KPTTTKRAPR RVGVGKEAAT SNENGAAKKG  720
KVHPPEVVTS VGTQGCFNQV ELSDGRFAQL QNVVPAPLHS MVPAMFQNVA SPQFHNVATS  780
HVPENRLPR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087462.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087462.10.0protein FAR1-RELATED SEQUENCE 4
RefseqXP_024021010.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLW9QKD50.0W9QKD5_9ROSA; Protein FAR1-RELATED SEQUENCE 4
STRINGXP_010087462.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]