PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087464.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 400aa    MW: 44538.4 Da    PI: 6.9923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087464.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd++++ G g+W++ ++  g++R++k+c++rw +yl
   XP_010087464.1 14 KGPWTPEEDQKLVDYIRRNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding57.33.7e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l++++++ lG++ W+tIa +++ gRt++++k++w+++l
   XP_010087464.1  67 RGKFTEDEEKLIINLHAVLGNK-WSTIAGHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-24664IPR009057Homeodomain-like
PROSITE profilePS5129418.036961IPR017930Myb domain
SuperFamilySSF466894.49E-3111108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002496.6E-171461IPR001005SANT/Myb domain
CDDcd001672.55E-111661No hitNo description
PROSITE profilePS5129427.08862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2765116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002492.8E-1667112IPR001005SANT/Myb domain
CDDcd001671.59E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRSPSSDEN GLKKGPWTPE EDQKLVDYIR RNGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TEDEEKLIIN LHAVLGNKWS TIAGHLPGRT DNEIKNFWNT HLKKKLLQMG  120
IDPVTHRPRT DLNILSNLPQ LIAAANFATT FLNNTSNNNN PFSLDTSNLR LSYSDTAQLA  180
KFQVLHNFLQ VLNTTTTGTS TSANATTPSL EAIYNLLGSS SSSSTIMDRQ PCVDEYLRLM  240
EHSRLDDAFG HGPHLVDAGF GPHNPSTTRI QSSTSTFPNT ELAPHQDAHH VLIPPITTNH  300
PISTASNPLG IVNHQLACNN NQLPHLVSVA SSPDDHHDHE TATILSNRII NQNYKVNNNP  360
NNNTDHLSNP NSSTTSTTFE AWGDLIDDET TDSYWKHIME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087464.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087464.20.0transcription factor MYB41
SwissprotQ9S9Z22e-88MYB93_ARATH; Transcription factor MYB93
TrEMBLW9QDG20.0W9QDG2_9ROSA; Transcription factor
STRINGXP_010087464.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-87myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]