PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087483.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family E2F/DP
Protein Properties Length: 349aa    MW: 38520.9 Da    PI: 6.0624
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087483.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2796178271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_010087483.1  96 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgssvttpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 178
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.4E-1312349IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.0E-4691183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.8E-3495178IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-2597178IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-2198179IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.16E-43183286IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-43184297No hitNo description
SMARTSM011386.6E-74185347IPR014889Transcription factor DP, C-terminal
PfamPF087816.2E-42186297IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGTRTQHQQG SRAVDDDGDD VPGLGGATTT TTASGQSVSM SGSVGSPSSR SEQTMATPAN  60
DNTFRLNHLD IHADDAGSQG SKKKKRGQRA VGGDKSGRGL RQFSMKVCEK VESKGRTTYN  120
EVADELVAEF ADPGSSVTTP DQQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP  180
RTSLNDIEEL KTERLSLRNR VEKKTAYLQE LEDQYIGLQN LIQRNEQLYS SGNTPSGGVA  240
LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDN YVLKAMKFCE RPQADDMAHN  300
FSADGGEGSS MSSMYQTQIP LPSMSNTPIR TPTSPPLPGI LKARVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3489183193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087483.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-163DPB_ARATH; Transcription factor-like protein DPB
TrEMBLW9QN120.0W9QN12_9ROSA; Transcription factor-like protein DPB
STRINGXP_010087483.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-140Transcription factor DP