PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087532.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 179aa MW: 19931.7 Da PI: 6.7793

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087532.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.8e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp+e+p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdP+yG+vg i+ lq+q+++l+ +la XP_010087532.1 6 PCASCKLLRRRCAKDCIFAPYFPSEDPHKFAIVHKVFGASNVSKMLQEIPVHQRADAVSSLVYEANARMRDPIYGCVGAISYLQNQVSELQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010087532.1 101 VAHAE 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.54	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.3E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGGNPPCASC KLLRRRCAKD CIFAPYFPSE DPHKFAIVHK VFGASNVSKM LQEIPVHQRA 60 DAVSSLVYEA NARMRDPIYG CVGAISYLQN QVSELQMQLA VAHAEILCIQ MQQEPMVATS 120 PPQIFDPAND HDDQKSYFVG HNNNLVPADQ FHKFASASNI VVHDSFKRES IFGHDMVSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-49	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-49	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087532.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087532.1	1e-132	LOB domain-containing protein 12
Swissprot	Q8LBW3	5e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	W9QYS9	1e-130	W9QYS9_9ROSA; Uncharacterized protein
STRING	XP_010087532.1	1e-131	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-74	LBD family protein

Link Out ? help Back to Top
Entrez Gene	21390352

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]