PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087661.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NF-YB

Protein Properties

Length: 168aa MW: 17869.5 Da PI: 6.5052

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087661.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	114.1	7.2e-36	22	89	30	97
NF-YB 30 daketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 + +v ecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk yl+k+re+egek XP_010087661.1 22 EQDRLVPECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQKFREIEGEK 89 5567899***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.6E-32	22	93	IPR009072	Histone-fold
SuperFamily	SSF47113	7.33E-25	25	98	IPR009072	Histone-fold
Pfam	PF00808	2.0E-12	26	63	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-20	27	45	No hit	No description
PROSITE pattern	PS00685	0	30	46	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.8E-20	46	64	No hit	No description
PRINTS	PR00615	3.8E-20	65	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MADSDNDSGG QNANSSASSP REQDRLVPEC VSEFISFITG EASDKCQREK RKTINGDDLL 60 WAMTTLGFED YVEPLKGYLQ KFREIEGEKT ALGRGQPDHA ADAVNPGGGG FGGGGGGVYG 120 GTGVAQPAAM MMMSHGHHHH HHHHNQIQGH HNMFGSGSGN SSTGRPNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-28	27	84	36	93	NF-YB
4awl_B	2e-28	27	84	37	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-28	27	84	37	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087661.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087661.1	1e-122	nuclear transcription factor Y subunit B-2
Swissprot	O23310	4e-45	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	W9QE07	1e-121	W9QE07_9ROSA; Nuclear transcription factor Y subunit B-3
STRING	XP_010087661.1	1e-122	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	6e-43	nuclear factor Y, subunit B2

Link Out ? help Back to Top
Entrez Gene	21393902

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]