PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087679.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 446aa    MW: 51016 Da    PI: 6.5524
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087679.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-17187233148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v ++G + W+ Ia++++ gR +kqc++rw+++l
   XP_010087679.1 187 KGQWTGEEDRLLIQLVGEYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 233
                      799*****************************.*************97 PP
2Myb_DNA-binding58.41.6e-18239281145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
   XP_010087679.1 239 KDTWSEEEDKILIEAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 281
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.398182237IPR017930Myb domain
SMARTSM007172.4E-17186235IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-31186280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-25188237IPR009057Homeodomain-like
CDDcd001676.08E-16190233No hitNo description
PfamPF139211.6E-18190247No hitNo description
SMARTSM007171.4E-17238286IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-23238286IPR009057Homeodomain-like
PROSITE profilePS5129421.614238288IPR017930Myb domain
CDDcd001677.64E-14241284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MELETELVKE NNNVYHPSLS ICENYTEPFM KNALIPIEAS SPQGNYLQDF HHLDHFHYDL  60
VNGSSSNPIF LPQTPSIEPF ETFSCVSFMN LNGFHHEYYN PFGQVTKNNF LSGDQYLRIN  120
GFDLSNFLPL NRQEITKPSN FVVPDETSCI TAENGYYKNV HVTGKNRNNS LAKRRAFKGH  180
KKINPVKGQW TGEEDRLLIQ LVGEYGVRKW SHIAQMLPGR IGKQCRERWH NHLRPDIKKD  240
TWSEEEDKIL IEAHAEIGNK WAEIAKKLPG RTENSIKNHW NATKRRQFSK RKCRSKCPGG  300
SLLQDYIKSL NLGSSSSTRQ YQRNTSAVNA NDDNGTTTTN SIKSPIHHDD QPPTLEVRSY  360
DDFDEDPVSC FDKNMMIFQD RYGTIDSLLD EMMTCDPFGA HDDKKGVVVD LSAGDNTHHR  420
VMEGDEVVKK EMDLVEMISQ VNGVNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-451862873104C-Myb DNA-Binding Domain
1msf_C3e-451862873104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087679.10.0transcription factor MYB98
SwissprotQ9S7L24e-87MYB98_ARATH; Transcription factor MYB98
TrEMBLW9QL280.0W9QL28_9ROSA; Transcription factor
STRINGXP_010087679.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-89myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]