PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087689.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YA
Protein Properties Length: 433aa    MW: 48096.2 Da    PI: 9.0866
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087689.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.24.8e-32282338158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hAl+R+RgsgGrF
  XP_010087689.1 282 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-VKARKPYLHESRHLHALKRARGSGGRF 338
                     79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-37280341IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.262281341IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-26283338IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-22284306IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860286306IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-22315338IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEDKFEQQKN LIFGEGGKVV ELLVVRFEID IVFLKVDLGL ISHNLFTLVS SLIFLLCVIC  60
GSVALRTDKW YIVAAYAQFG SRLPMSALSK FKPKHDVNLL KKDSSLGSVQ SESQLFLSCP  120
TWENSTESHA QHSSISQSLS LRMGVAAHHR HNTKQLSFQF QDQDSSSTQS TCQSHPEVAS  180
VKGSNLCEYG LVSTQSGYNQ TQEKPMGGHG KQVSSMGTQD FVFPSQLDYN QPIAHIPFHY  240
AEPYFGGLLA AATYGPQTMI HHSQLVGMAP ARVPLPLDLT EDEPIYVNAK QYRAILRRRQ  300
FRAKLEAQNK LVKARKPYLH ESRHLHALKR ARGSGGRFLN AKDVQDSDPT GDALHASGSA  360
QHHLTGNKME SKIHQQKNHK NCSSSTSFSE VTSGSNSDGV FQQQEFRFSG YPMHTHSVDS  420
RGGRNQLHIS TLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19282343263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022573.10.0nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLW9QZC80.0W9QZC8_9ROSA; Nuclear transcription factor Y subunit A-3
STRINGXP_010087689.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-55nuclear factor Y, subunit A3