PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087708.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 259aa    MW: 29151.4 Da    PI: 10.3084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087708.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g W+ I +        ++Rt  ++k++w+++
   XP_010087708.1  5 KQKWTEEEEEALLAGVAKHGPGKWTIIIKDPDfahflTHRTNVDLKDKWRNL 56
                     79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.187160IPR017930Myb domain
SuperFamilySSF466894.97E-17258IPR009057Homeodomain-like
SMARTSM007177.1E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-16556IPR009057Homeodomain-like
PfamPF002493.3E-9556IPR001005SANT/Myb domain
CDDcd116601.35E-14656No hitNo description
SuperFamilySSF467852.34E-14102186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.7E-13102169IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.0E-12104176IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.576104174IPR005818Linker histone H1/H5, domain H15
PfamPF005389.3E-9107169IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGNPKQKWTE EEEEALLAGV AKHGPGKWTI IIKDPDFAHF LTHRTNVDLK DKWRNLGPSI  60
SSRGSKEKTR DPKIVNIRSS SIRENASPHA AMDDPSNSTL DGKSASRYNA MIFEALSTMK  120
DVNGSDFVGI LNFIKQRHDM ALPPNFRRLM STRLRRLVLQ GKVEKVKNGY KLKKEALLGS  180
KTPTPKQEDI RPQQLQNFVL TTSVKKLKEI SDTAAYKVAD AENKSFLAAE AMKEAERILK  240
MAEETESILH LVHGEKPSF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022594.10.0telomere repeat-binding factor 4
SwissprotF4I7L12e-59TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLW9QDW00.0W9QDW0_9ROSA; Histone H1
STRINGXP_010087708.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-57MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]