PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087735.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MYB_related

Protein Properties

Length: 316aa MW: 34302.2 Da PI: 7.6987

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087735.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.8e-14	103	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky XP_010087735.1 103 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 147 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.547	96	152	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-16	98	153	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-9	100	150	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.3E-16	101	150	IPR006447	Myb domain, plants
CDD	cd00167	1.91E-9	103	148	No hit	No description
Pfam	PF00249	3.4E-11	103	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-11	103	147	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSLTCSSKND PPVALAGGED SGVGEFMLFG VRVVVDSMRK SVSLNNLSQY EQPQESAINN 60 SPNTNNNNTG NGKDDVAPGY TSENDVVHNS GGNRERERRR GIPWTEEEHK LFLLGLQKVG 120 KGDWRGISRN FVKTRTPTQV ASHAQKYFLR RNNHNRRRRR SSLFDITTDT VAAIPMEEDQ 180 AVHHQENVSQ SHPLPLSPEP CNPGGFSLVP TCPVSTVGSS VLPTPVENPM EKLTLGQTNP 240 ETTSSPKLVR PIALLSIPHG TATADLSLNL KSAIDPSALS LKLSLPSDPR ESSSARHSAF 300 QSMSSFNNGD SIITVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087735.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087735.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	5e-73	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	W9QL74	0.0	W9QL74_9ROSA; Transcription factor
STRING	XP_010087735.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	9e-54	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	21392281

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]