PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087948.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 610aa    MW: 68679.2 Da    PI: 8.3765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087948.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06561582223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C++Cg sF+ + +Lk+H r+H
  XP_010087948.1 561 TCEKCGASFKKPAYLKQHTRSH 582
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.11E-1257308IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.9E-1058232IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF146301.6E-52250521IPR020796Origin recognition complex, subunit 5
PROSITE profilePS5015711.905560587IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-5561586IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280562582IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0009744Biological Processresponse to sucrose
GO:0000808Cellular Componentorigin recognition complex
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MGKEESPQIT RRTTRYSSAA VLKNSVETKA SDTNLPSLND LLYGEEGKPI SLDDVLSSFP  60
GRKIQILELM HILGPVNCPM VPLFIYGGTF TGKTSITLQI FRHLNRPFVY SGCLTCYNPR  120
ILFESVLNQL LLHRKNEANG YSSAKRCERP SDFVNFLREA LVSVTTSLRG NSGKSGSKKS  180
DKRANGNMVY LIFDNLELVR EWDKSSTILP FLFNLYDILK MPELGLIFIS NTSPDTYYSN  240
MGYVEPTPLY FSDYSEDDLR QIFMRNQENK KLYSSFLEVV LRPFFRITRR VDELSTAFSQ  300
LYKKYCEPLS DPGVVPNEEM KRKLFSNLQP HIPPSMNDIF KVSSQPSTKV GATKEAKWKS  360
GTKRSGGFEA IDQLDLHMST SAKYLLLSAF LASRNPATLD ASLFDSTGGS DNRKRKRKPS  420
EKSLEQKEAV EQDLLMRGPG TFPLERLLAI FQCITSLAEG LLEEEEQGND GLGVQGYDNS  480
LMSDVLLQLS SLCNANFIVK GGSCPLEGST RYRSTICEDL ALKSKQKFLG GICKSKWLEN  540
DEMEKRAETE ETKEGVKQTN TCEKCGASFK KPAYLKQHTR SHSDENYKDA REPVRPDLPE  600
LAKARNPTNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ujm_E5e-358345533370Origin recognition complex subunit 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412417RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. {ECO:0000250|UniProtKB:O43913}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087948.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates 13 hours after cell cycle reactivation by sucrose addition following cell cycle arrest mediated by sucrose deprivation. {ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024052.10.0origin of replication complex subunit 5
SwissprotQ6EWX00.0ORC5_ARATH; Origin of replication complex subunit 5
TrEMBLW9QP900.0W9QP90_9ROSA; Origin recognition complex subunit 5
STRINGXP_010087948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-06transcription factor IIIA
Publications ? help Back to Top
  1. Witmer X,Alvarez-Venegas R,San-Miguel P,Danilevskaya O,Avramova Z
    Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5.
    Nucleic Acids Res., 2003. 31(2): p. 619-28
    [PMID:12527770]
  2. Collinge MA,Spillane C,Köhler C,Gheyselinck J,Grossniklaus U
    Genetic interaction of an origin recognition complex subunit and the Polycomb group gene MEDEA during seed development.
    Plant Cell, 2004. 16(4): p. 1035-46
    [PMID:15020747]
  3. Masuda HP, et al.
    Genome based identification and analysis of the pre-replicative complex of Arabidopsis thaliana.
    FEBS Lett., 2004. 574(1-3): p. 192-202
    [PMID:15358564]
  4. Diaz-Trivino S, et al.
    The genes encoding Arabidopsis ORC subunits are E2F targets and the two ORC1 genes are differently expressed in proliferating and endoreplicating cells.
    Nucleic Acids Res., 2005. 33(17): p. 5404-14
    [PMID:16179646]
  5. Shultz RW,Tatineni VM,Hanley-Bowdoin L,Thompson WF
    Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice.
    Plant Physiol., 2007. 144(4): p. 1697-714
    [PMID:17556508]
  6. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  7. Gavin KA,Hidaka M,Stillman B
    Conserved initiator proteins in eukaryotes.
    Science, 1995. 270(5242): p. 1667-71
    [PMID:7502077]