PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088142.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 543aa MW: 59011.9 Da PI: 5.0385

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088142.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	178	238	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_010088142.1 178 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 238 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	175	235	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-32	180	236	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	182	236	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	184	220	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MSDAKDPAIK LFGKTIPVAE VPVLCCGGGS PEASSSTAAD EVEEEDYVII KNTNINDDNI 60 MDMDQKRANS VANSSFVEGN TVKDGEEEQD GDNDKKETTG EKPSDTKEVD GAQPVSSEEQ 120 RNSDATSGVS ENPKTPSVEK ESGTPKASKT EEEQSETSNS QEKTSEASNL QEKTLKKPDK 180 ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKNSASH 240 YRHINVSEAL QNARSDVPTA VHAHHPSLKS NGTVLTFGSD APLCESMASV LNLADKTMHN 300 CTQNGFHKPE ELRIPVSYGG GEYGDNSANG SSITTSNSKD ETSKYGSQEQ VIQNCQSFPP 360 QMPCFPGAPW PYPWNSAQWS PPVPLPAFCP PGFPMPFYPA AAYWGCSVPG TWNIPWIPQP 420 SSPNVTAPSS GPNSPTLGKH SRDENPLKPN SSVEEEPPKE SNSERCLWIP KTLRIDDPGE 480 AARSSIWATL GIKNDKADSI SGGGLFKAFR TKDDERNHVA ENSKVLQANP AALSRSLSFQ 540 ESS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MSDAKDPAIK LFGKTIPVAE VPVLCCGGGS PEASSSTAAD EVEEEDYVII KNTNINDDNI  60
MDMDQKRANS VANSSFVEGN TVKDGEEEQD GDNDKKETTG EKPSDTKEVD GAQPVSSEEQ  120
RNSDATSGVS ENPKTPSVEK ESGTPKASKT EEEQSETSNS QEKTSEASNL QEKTLKKPDK  180
ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKNSASH  240
YRHINVSEAL QNARSDVPTA VHAHHPSLKS NGTVLTFGSD APLCESMASV LNLADKTMHN  300
CTQNGFHKPE ELRIPVSYGG GEYGDNSANG SSITTSNSKD ETSKYGSQEQ VIQNCQSFPP  360
QMPCFPGAPW PYPWNSAQWS PPVPLPAFCP PGFPMPFYPA AAYWGCSVPG TWNIPWIPQP  420
SSPNVTAPSS GPNSPTLGKH SRDENPLKPN SSVEEEPPKE SNSERCLWIP KTLRIDDPGE  480
AARSSIWATL GIKNDKADSI SGGGLFKAFR TKDDERNHVA ENSKVLQANP AALSRSLSFQ  540
ESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088142.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088142.1	0.0	cyclic dof factor 2
TrEMBL	W9QEV1	0.0	W9QEV1_9ROSA; Dof zinc finger protein
STRING	XP_010088142.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-115	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	21396757