PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088162.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

ZF-HD

Protein Properties

Length: 101aa MW: 11164.5 Da PI: 10.0381

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088162.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	29.7	1.5e-09	71	90	3	22
ZF-HD_dimer 3 kvrYkeClkNhAaslGghav 22 v+Y+eClkNhAaslGgha+ XP_010088162.1 71 VVTYRECLKNHAASLGGHAL 90 589***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-4	70	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.9E-6	72	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	11.076	74	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MEIASTTITA TTANVTAAGT TKSPEAESET PTRIQSAKPL SFSNGVLKRH HPHHNNHHHQ 60 HHHHHHHHAV VVTYRECLKN HAASLGGHAL RLWLPPQLPP P

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088162.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088163.2	2e-54	LOW QUALITY PROTEIN: zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	2e-16	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	W9QF05	4e-65	W9QF05_9ROSA; Uncharacterized protein
STRING	XP_010088162.1	7e-66	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-18	homeobox protein 34

Link Out ? help Back to Top
Entrez Gene	21396777

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]