PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088245.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 317aa    MW: 35503.9 Da    PI: 7.7383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088245.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.9e-07156175120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp+C+ksF+r  nL+ H+
  XP_010088245.1 156 FSCPICSKSFNRYNNLQMHM 175
                     89*****************9 PP
2zf-C2H215.83.9e-05240262123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  k + ++H +++
  XP_010088245.1 240 FMCRKCGKPFAVKGDWRTHEKNC 262
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.1E-6149178No hitNo description
PROSITE profilePS5015710.824156183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-6156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-6225260No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5236260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035572240260IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNIVSNKLLV SPSPNFLQNH HQNYNHYSTR PSSPPLKEAL PLLDSLRVQD QELSYTQLSS  60
TGTETDEILG DHHHHHRDCN DGGGDDDDKS VTVALHIGLP FPSPNSEVVG SMEKELGSAV  120
STVDPKQISK GITSSNATQQ YWIPTPSQIL VGPTQFSCPI CSKSFNRYNN LQMHMWGHGS  180
QYRKGPDSLK GTQPTAMLRL PCYCCAPGCK HNIDHPRARP LKDFRTLQTH YKRKHGVKPF  240
MCRKCGKPFA VKGDWRTHEK NCGKIWYCVC GSDFKHKRSL KDHIKAFGRG HDAFGVDCLD  300
DDEEPASEIE HDGEASM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088245.20.0zinc finger protein WIP2
SwissprotQ9SVY11e-116ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLW9QQ330.0W9QQ33_9ROSA; Protein TRANSPARENT TESTA 1
STRINGXP_010088245.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]