PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088327.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 540aa    MW: 61950.1 Da    PI: 7.2141
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088327.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-0685106426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C f++  G+C+ GdrC+F H+
  XP_010088327.1  85 VPCYFYFN-GFCNKGDRCCFLHD 106
                     69******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156635.1E-11664No hitNo description
SMARTSM003560.047634IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.023635IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.1313763IPR000571Zinc finger, CCCH-type
SMARTSM003560.283962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10881108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-581106IPR000571Zinc finger, CCCH-type
SMARTSM003560.001282107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-486107IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MDEELKKRYT DCVYFLASPL TCKKGIDCEY RHCEIARLNP RDCWYWLSGS CRNPTCAFRH  60
PPLDVHTGAT SESAPSSVPV NKTNVPCYFY FNGFCNKGDR CCFLHDVNAD APPREKLVNT  120
TLAKSEAPNV GNNTFAVWEL GSAPANKPVI QQKTNKTLVP SATATATANI EAHTMVQPKE  180
DIQLLVPEDV AQQSGASPIS VSECEETATI RSDSLPAGEF VHSISYACEE NSSEEQVDGR  240
IDPEERWESS PGFDVLVDNE SENLDSEDDP EYMMALDRKR RDLTSHFLAY DFENQVEYDR  300
YREMELQYEI ETCSRYDHPV SKDIFGDVEN NPGHADVRMF DSFLSRKELA FGNQRHADLR  360
DHLRRRKFVD SHSVTGLSRM RESSQLIRRN HERPWRHGMG RIRPLERRAL DVGGNTIDSL  420
GNNGTYSNGG RRHGFPRHSQ KYQSRRQHFK EKRLPKRRFL SSEISSERRV PRERMSTRES  480
TKFLGPKTLS QIREEKRKPE EDGDFTRKMR SYGRKSSVDF QGPKPLSEIL KEKGKLTCET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281DRKRRD
2452457RLPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088327.10.0zinc finger CCCH domain-containing protein 32
TrEMBLW9QMP10.0W9QMP1_9ROSA; Zinc finger CCCH domain-containing protein 32
STRINGXP_010088327.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823