PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088337.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 341aa MW: 38145.9 Da PI: 7.1435

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088337.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f G C+ G++C+FaHg XP_010088337.1 87 FKTRLCAKFKM-GMCRNGENCNFAHG 111 69*******.***********8 PP
2	zf-CCCH	28.4	2.8e-09	150	172	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H XP_010088337.1 150 MKLCKKFYNGEECPYGDRCNFLH 172 689****66********** PP
3	zf-CCCH	43.8	4.2e-14	225	250	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ + +tG+C++G++C+FaHg XP_010088337.1 225 WKTKLCNKWEQTGHCPFGEKCHFAHG 250 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	5.3E-14	82	119	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.63E-8	84	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-5	86	112	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.112	86	113	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.2E-6	87	111	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-7	147	174	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.8E-4	147	174	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.117	147	175	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.2E-7	150	172	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.7E-9	150	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.8E-16	220	253	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-10	221	254	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.854	224	252	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-7	224	251	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-11	225	250	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MSFSDPSSPF MPSLQSYIPG SDAINILPQF SMDNEGRNSD FDLQPPPYKR ARNSEENQSN 60 SLPFLPMNTI MIPPNAPVNK GTTNIFFKTR LCAKFKMGMC RNGENCNFAH GSEDMRQPPA 120 NWQELVGLRG DEDRISSGNW DDDQKIIHRM KLCKKFYNGE ECPYGDRCNF LHEDPSKYRD 180 DSGRFRESSA ISIGTSEPSG ICEDNKMVLN AGSDPLRGNV KPVYWKTKLC NKWEQTGHCP 240 FGEKCHFAHG LADTQSALHK LQASSGRVEG EVPSYASIST KPQVSAGDSL PNATTVAGFN 300 EDVQGKKCLL KWKGPKKINR IYADWLDDLP LVHNLPSRVE S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088337.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088337.1	0.0	zinc finger CCCH domain-containing protein 39
Swissprot	Q9LT81	6e-93	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	W9QMQ1	0.0	W9QMQ1_9ROSA; Zinc finger CCCH domain-containing protein 39
STRING	XP_010088337.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8333	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-86	C3H family protein

Link Out ? help Back to Top
Entrez Gene	21389305