PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088495.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 207aa MW: 22895.5 Da PI: 4.7672

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088495.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81	1.8e-25	32	106	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+ +l++ela+++++l XP_010088495.1 32 SARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLADPVYGCVSTILALQQQVTSLQTELAMVQNQL 106 589********************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.347	3	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-24	31	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MVSGLDMTSD NEWVAAIDVR ILVYSNNLQM GSARFAAVHK VFGASNVSKL LLHIPVNRRH 60 DAVVTISYEA QARLADPVYG CVSTILALQQ QVTSLQTELA MVQNQLVNSR FAFANVFQSS 120 QQQQQLQQHN VGVLQPAYSN NSSASNNLIS NISSFTTNFD IGTTDTAPSS QSLDPIRALP 180 RASQEEDDDE EEDRIPRVFP NEMLHRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-22	34	116	39	119	LOB family transfactor Ramosa2.1
5ly0_B	6e-22	34	116	39	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088495.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027661.1	1e-127	LOB domain-containing protein 20
Swissprot	Q9SRV3	8e-52	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	W9QQM1	1e-150	W9QQM1_9ROSA; Uncharacterized protein
STRING	XP_010088495.1	1e-151	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	3e-47	LOB domain-containing protein 20

Link Out ? help Back to Top
Entrez Gene	21396867