PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088541.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 283aa MW: 31686.7 Da PI: 6.0867

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088541.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.5	9.6e-38	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC+kdC+lap fpa+qp+kf ++h+l+G++n++++lka+ e ++dam+s+v+e+ +rar Pv+G++g+i++lq ql+ + +el+ XP_010088541.1 10 ACAACKYQRKKCSKDCPLAPFFPADQPEKFHYAHRLYGVRNIMSILKAVCAESKQDAMTSIVFESAMRARFPVHGCLGIINQLQTQLQYALEELH 104 7********************************************************************************************** PP DUF260 96 llkee 100 +++++ XP_010088541.1 105 HVHTK 109 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.036	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-35	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MTIKGGTSQA CAACKYQRKK CSKDCPLAPF FPADQPEKFH YAHRLYGVRN IMSILKAVCA 60 ESKQDAMTSI VFESAMRARF PVHGCLGIIN QLQTQLQYAL EELHHVHTKL AICKQQETPS 120 SSSHDPSPLQ LTITPNTNFI DPNQPSSSKM SMPMILNYDL INNRISGMYL NANYEGNNLK 180 PLMIQNPSFN SDEPLVQSSM FGSQEYPIQQ ELDVSQYDDI PFDPMIDDRS QEPYDSSGEQ 240 SLKNKIVESE YNISKTDLRD STTSVSKTEL ANAAASFSLT RGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-23	6	110	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-23	6	110	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088541.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088541.1	0.0	LOB domain-containing protein 12
TrEMBL	W9QQR3	0.0	W9QQR3_9ROSA; Uncharacterized protein
STRING	XP_010088541.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-42	LOB domain-containing protein 27

Link Out ? help Back to Top
Entrez Gene	21385662