PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088896.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 776aa    MW: 84271.7 Da    PI: 6.1806
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088896.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.31.8e-1014097757374
            GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfshlt 97 
                     ++Ae +++g   laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+  + s++ +  p   +s+++    + ++ a+k+fse+sP+l+f+++t
  XP_010088896.1 409 QAAELIETGTPVLAQGILARLNHQLSPLGKPFQRAAFYFKEALQLLLQTnNNSNVNNNHPFALSSSSSpfnLILKIGAYKTFSEISPVLQFANFT 503
                     79**********************************************955555655555555555547779999******************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl.ed 188
                     +NqaIlea+eg +rvH+iDfdi++G+QW++++q+La R+   ++  sl+iT+++sp+++++ el  t+e+L++fA+e+++ fe ++l  + l + 
  XP_010088896.1 504 CNQAILEATEGFTRVHVIDFDIGYGGQWASFMQELALRNsgvGNGVSLKITAFASPSTHDEFELGFTQENLKHFASEINLAFELEILSLEMLnSG 598
                     ***************************************6654567****************************************966644145 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l +++L+v+ +Ea+aVnl +  ++ +  ++sl+     vL++vk+lsPk+vv  e+ +d+++ +F +++++al+ ys l++sl+a    + ++++
  XP_010088896.1 599 LWPQNLHVSDNEAIAVNLPIGPFSNY--PLSLPL----VLRFVKQLSPKIVVSLERGCDRTDVPFPAQLVHALHSYSGLLESLDAV-NVNLDAMQ 686
                     789*****************888777..777777....*********************************************665.45679*** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                     k+E+ ll++ i+++v  +++++  r+     Wr+++ + GF+p+++s+++++qa++l+++++++g++ve++ s slvl+W++++Lvs+SaWr
  XP_010088896.1 687 KIEKCLLQPGIEKIVLGRHRNSLDRM---LPWRSAFLNLGFSPLTFSNFTESQAECLVQRTPVRGFHVEKKqSSSLVLCWQRKELVSASAWR 775
                     *****************999965555...59**************************************66377888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.07377754IPR005202Transcription factor GRAS
PfamPF035146.1E-99409775IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MKAMPLPFEE FQGKGVLDFS SSSSSSSDSP QNWTTLNTTT TTINTTPNTN TTTLTIKKSS  60
KDKNCYVGSE PTSVLDARRS PSPPTSSSTL SSSLGGGGGS NSGGGSHSTD TTPTGVAAAA  120
AAVSDHHHNQ LPLTTTFLEE EKCGLGMEDW ESVLSESPGQ EQSILRLIMA DVDDPSLGLN  180
KILETTTTTT TPTTGGSVSH SQDMEFNAGF GVVDDQVGGY GFEPPNIIDP HSFSSSDFHF  240
TNNVRLAQNT NPTMFSPNNL LPVFHNQQQL MESVVDAKPQ IFNNNPQMVM INQNQAAQFS  300
HHNPSSALVM PLTYAHLQEH HVVSPPPAKR LNTGVGGLGG PNFHVQQKVQ FPYTGQEQQL  360
QLLSHQIRPA LNTTTATTAM GVMKQKSGGT ATATATSDEQ LLVGSQPHQA AELIETGTPV  420
LAQGILARLN HQLSPLGKPF QRAAFYFKEA LQLLLQTNNN SNVNNNHPFA LSSSSSPFNL  480
ILKIGAYKTF SEISPVLQFA NFTCNQAILE ATEGFTRVHV IDFDIGYGGQ WASFMQELAL  540
RNSGVGNGVS LKITAFASPS THDEFELGFT QENLKHFASE INLAFELEIL SLEMLNSGLW  600
PQNLHVSDNE AIAVNLPIGP FSNYPLSLPL VLRFVKQLSP KIVVSLERGC DRTDVPFPAQ  660
LVHALHSYSG LLESLDAVNV NLDAMQKIEK CLLQPGIEKI VLGRHRNSLD RMLPWRSAFL  720
NLGFSPLTFS NFTESQAECL VQRTPVRGFH VEKKQSSSLV LCWQRKELVS ASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-3141977519375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4600676e-31AM460067.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X219796.5, clone ENTAV 115.
GenBankLN6819246e-31LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132656e-31LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029637.10.0scarecrow-like protein 6 isoform X1
RefseqXP_024029640.10.0scarecrow-like protein 6 isoform X2
TrEMBLW9QP410.0W9QP41_9ROSA; Uncharacterized protein
STRINGXP_010088896.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-152GRAS family protein