PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088924.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 95aa    MW: 10838.1 Da    PI: 9.3704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088924.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08853346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   + + +a + + ++   +W  +a+ +g g+t++++k ++  
   XP_010088924.1  8 TWTAKQNKAFEKALAVYDKDtpdRWYNVAKAVG-GKTAEEVKRHYEL 53
                     7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.131459IPR017884SANT domain
SMARTSM007178.9E-8557IPR001005SANT/Myb domain
SuperFamilySSF466896.94E-13763IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-6761IPR009057Homeodomain-like
CDDcd001671.26E-6855No hitNo description
PfamPF002492.6E-6852IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASSSMSTWT AKQNKAFEKA LAVYDKDTPD RWYNVAKAVG GKTAEEVKRH YELLLEDVKH  60
IESGQVPFPY YRTTGGSNQG NTNEDEKRLR NLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-42195193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1237173e-31JX123717.1 Viburnum acerifolium RADIALIS (RAD2B) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088924.12e-66protein RADIALIS-like 1
SwissprotF4JVB84e-43RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLW9QGR54e-65W9QGR5_9ROSA; DnaJ homolog subfamily C member 2
STRINGXP_010088924.17e-66(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-45RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]