PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088931.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 112aa    MW: 12679.3 Da    PI: 9.3892
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088931.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091662347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+   + + +a +++ ++   +W  +a+ +g g+t++++k ++  +
   XP_010088931.1 16 SWTPKQNKSFEKALALYDKDtpdRWQNVAKAVG-GKTPEEVKRHYEVL 62
                     7********************************.***********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6631267IPR017884SANT domain
SMARTSM007171.5E-81365IPR001005SANT/Myb domain
PfamPF002498.2E-81662IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-61669IPR009057Homeodomain-like
SuperFamilySSF466897.48E-131670IPR009057Homeodomain-like
CDDcd001671.02E-61763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MASSSLSKQI SYSSSSWTPK QNKSFEKALA LYDKDTPDRW QNVAKAVGGK TPEEVKRHYE  60
VLLEDLRQIE SGRIPIPNYK SSGHDEEESM GKGRLGASWP DRKLKELKVL ID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-331383777RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030285.11e-54protein RADIALIS-like 3
SwissprotQ1A1734e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLW9QP668e-76W9QP66_9ROSA; Uncharacterized protein
STRINGXP_010088931.11e-76(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-36RAD-like 6