PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088951.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 519aa    MW: 57157.2 Da    PI: 8.1053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088951.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05108130123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_010088951.1 108 FVCEICNKGFQRDQNLQLHRRGH 130
                     89*******************88 PP
2zf-C2H212.70.00039185207123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_010088951.1 185 WKCEKCSKKYAVQSDWKAHSKTC 207
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-6107130No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5107130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.3E-5108130IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949108130IPR007087Zinc finger, C2H2
SMARTSM003550.017108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM00355230150180IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4173206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-6180205No hitNo description
SMARTSM00355140185205IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MVEIGVRDGS GGGHEGVSLS SGNNNITAKE ETDHVVQVSV GKQERVENFH ASNSLSSTTT  60
LSNGSTTQQL VLDQSPPVKK KRNPPGNPDP SAEVVALSPN TLLARNRFVC EICNKGFQRD  120
QNLQLHRRGH NLPWKLKQRN SNEVIRRRVY ICPEPSCVHH NPARALGDLT GIKKHFCRKH  180
GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYKCECGTLF SRRDSFITHR AFCDAIAEEN  240
NKTTAQQLGP VPSNMQGRHP NLQTQISSRE LISSLINSSN IINMPPTNDN DNNKYHANNI  300
APTDQASEHD HQVLSKHNGN IIPSHLIMKN PLTPDHHHLH QLEYSQNGHN GYMSATALLQ  360
KAAQMGSTVS TASSALAPSS FGLDDHRQYG QGFNNNSSNS LGVFSGLIFD NGHNNHGNFV  420
NGNDVVLHGE SCDNMGLASG GGGDVLTVDF LGINGRSKRP GNLSNFHEHE KVQGVVNLHE  480
QNNKQAVLDH DHHDDHQAIR FNGGIGHLQG LSQFEGFNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34181245367Zinc finger protein JACKDAW
5b3h_F2e-34181245367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030476.10.0protein indeterminate-domain 7
SwissprotQ9SCQ61e-104IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLW9R2U00.0W9R2U0_9ROSA; Zinc finger protein MAGPIE
STRINGXP_010088951.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-94C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]