PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089025.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 309aa    MW: 34854.3 Da    PI: 7.1856
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089025.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-118663292
                    --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                     s  ++++++sg +W + l  +k++g ++l kGW eFv+   L+ g  + Fk++g s+f  
  XP_010089025.1  8 ISDPVIITTPSGAKWHMGL--TKYDGDIWLCKGWPEFVQHYSLENGQALFFKYKGCSQFDV 66
                    55568999***********..********************************98777743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.956172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-13370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-14371IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-8865IPR003340B3 DNA binding domain
CDDcd100171.17E-9869No hitNo description
Gene3DG3DSA:2.40.330.103.2E-5248304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-6248304IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-6252306No hitNo description
PROSITE profilePS508636.372252309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTNYGKTISD PVIITTPSGA KWHMGLTKYD GDIWLCKGWP EFVQHYSLEN GQALFFKYKG  60
CSQFDVVIIG VTGLEIDYSI TNSTQVIESD IDDGDNDDDD GDGGSPCLKE EEEPTTPFPQ  120
HARSPERVKR NIGDTHTQCG CFSSFNWIIP VAFVTHFDGK IPRRTCCQKS TTAVTASRKR  180
IMFLNYHREN QNKSSEGEQS KEDEVYDQGH SQNRHSSRIP TIRLTPCSNG KVCASEVRAI  240
QGANKYIPEY PFFKCVMSKA YVMKGFLGIP TSFFKMIMNK LERGSTVMLQ HNGRPWPVKF  300
CVDDRPTAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030825.12e-55B3 domain-containing transcription factor VRN1
TrEMBLW9QGY90.0W9QGY9_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010089025.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-17B3 family protein