PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089227.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 952aa    MW: 105935 Da    PI: 4.9493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089227.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-184893248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT+eEdell  av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_010089227.1 48 GKWTAEEDELLTAAVQHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 93
                     89****************************9.************986 PP
2Myb_DNA-binding60.15e-1999145148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde ++++v+++G + W+tIa+ ++ gR +kqc++rw+++l
   XP_010089227.1  99 KGPWSKEEDEAIIQLVNKYGAKKWSTIAAALP-GRIGKQCRERWHNHL 145
                      79******************************.*************97 PP
3Myb_DNA-binding46.11.2e-14151193145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_010089227.1 151 KEPWTQEEELGLIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 193
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5034293IPR017930Myb domain
SMARTSM007174.2E-154695IPR001005SANT/Myb domain
PfamPF002492.9E-154793IPR001005SANT/Myb domain
SuperFamilySSF466894.74E-1648103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-2349109IPR009057Homeodomain-like
CDDcd001671.24E-134993No hitNo description
PROSITE profilePS5129431.92994149IPR017930Myb domain
SuperFamilySSF466896.74E-3296192IPR009057Homeodomain-like
SMARTSM007171.2E-1898147IPR001005SANT/Myb domain
CDDcd001673.88E-16101145No hitNo description
PfamPF139211.2E-18102160No hitNo description
Gene3DG3DSA:1.10.10.609.3E-27110153IPR009057Homeodomain-like
SMARTSM007171.5E-13150198IPR001005SANT/Myb domain
PROSITE profilePS5129418.623150200IPR017930Myb domain
CDDcd001671.16E-10153193No hitNo description
Gene3DG3DSA:1.10.10.602.8E-21154200IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MTRLRRTSAK RAGAVDDAAA SDGPSNAFQN MKPLRGRTSG PTRRSTTGKW TAEEDELLTA  60
AVQHFKGKNW KKIAECFKDR TDVQCLHRWQ KVLNPELIKG PWSKEEDEAI IQLVNKYGAK  120
KWSTIAAALP GRIGKQCRER WHNHLNPSIN KEPWTQEEEL GLIRAHQIYG NKWAELTKFL  180
PGRTDNAIKN HWNSSVKKKL DTYLASGLLD QFQRVPFVVN PNSASSLVMQ PGHVNGVEEE  240
DTSECSQGSN VINCVQFDPV TENAGENFNT EEASSSTGHN LEQYSIYANS TPNKGKFGSC  300
ELASTSCLGV PEESSVQLGL SGLCIASNEN HTEPTLPQSS VGFCTSDGVE TLLVDSVKFE  360
RLLISDNDCS EMICTESREP GCFPQGNATG QSNNVALNGG RSSSLCEFDY ENSLSARTLP  420
VESFVHKKDV SERTLELEVV PNLRDDFICV DSPTGEAYKT DNYRKLDEAK DAPKLVAVDI  480
FSKPNSDSKG SSLQTENKTH LRTDFSQTLF SMGDIVTLQT EKQDLGNLSY EPPRFPKLDI  540
PFFSSDLMES TGDMQHNYSP FGIRQLMMPL TNLSSPRCLL LDSPIRDSTP RASLKHGPKR  600
TRSIMKKRLH EILSPAEGKM GETILRSSSF SAAFSSLESI FDANGACRMS ISSIDDSMQD  660
VINEDFEDGV KRVDKFDCRI SDKDEGNTES SDKQDQESIK LDAEAKLTRE RIECNLEGQL  720
IVSPRYQTNR NLVAAAFLSP RSQYPRKVDR SDLLDSLVSV IGKDEKYGVP ITSSECATSS  780
KPPEITSEFA ANDADTQSIY MFGETPSFQR DLESPSAWKS PWFLQSFLPG PPGLDTDIPL  840
QELDYFLSPV MRSYEAMAFM RQMSEQAAEY YPEMSSKTAI TSTGQDLTCK DDSFLHDEKE  900
NVPPNILMER RVLDFSGCGS PPMKEMENKK FAESFTSAST SNPSSYLMKS CR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-66482008159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-66482008159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089227.10.0transcription factor MYB3R-1 isoform X2
TrEMBLW9R3P80.0W9R3P8_9ROSA; Myb-related protein 3R-1
STRINGXP_010089227.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-98myb domain protein 3r-4