PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089277.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 256aa    MW: 27365.8 Da    PI: 4.9122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089277.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.43.1e-071021302755
             AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     k+ r++lg+  tae+Aa+a++ a+++++g
  XP_010089277.1 102 KKSRIWLGTSPTAEMAARAHDVAALAIKG 130
                     469**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.85571138IPR001471AP2/ERF domain
SMARTSM003809.9E-1290144IPR001471AP2/ERF domain
CDDcd000183.74E-1898140No hitNo description
SuperFamilySSF541711.11E-999139IPR016177DNA-binding domain
PfamPF008472.7E-499130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1699139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEKEIINIDS DAHENQTNLT SSSTTTTADD SSKTVKSEKD HCTTIAAAQN GSRRGNCGNA  60
RSKKRQRNDN ESSGSSSTNE GRNQEYGCGG GRGGPKTGEP RKKSRIWLGT SPTAEMAARA  120
HDVAALAIKG ASAYLNFPEL ARDLPRPLST APKDIQAAAA LAAAASFDAT KSPPHHDPAE  180
AEAEPSRADH LTPTDQESAS SPCLSENYED TLFDLPDLFI GGTDGSNIGF CYYSPSWHLC  240
AADTGLRLEE PFLWEY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032951.11e-155LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLW9R3T60.0W9R3T6_9ROSA; Ethylene-responsive transcription factor
STRINGXP_010089277.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]