PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010089349.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

HB-other

Protein Properties

Length: 84aa MW: 10152.4 Da PI: 10.1013

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089349.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.4e-20	26	81	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k ++++++q+++Le++F++ ++p++++r+eL ++lgL+ +qVk+WFqN+R++ k XP_010089349.1 26 KKKYHRHNAYQIQRLEAVFKEFPHPDENQRRELGRELGLDPKQVKFWFQNKRTQTK 81 79999***********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-20	12	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.92E-19	15	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	23	83	IPR001356	Homeobox domain
SMART	SM00389	4.7E-12	25	83	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-17	26	81	IPR001356	Homeobox domain
CDD	cd00086	1.01E-13	26	81	No hit	No description
PRINTS	PR00031	1.8E-5	54	63	IPR000047	Helix-turn-helix motif
PRINTS	PR00031	1.8E-5	63	79	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MEVEIFSGDE FDQQLQAANS NSRKGKKKYH RHNAYQIQRL EAVFKEFPHP DENQRRELGR 60 ELGLDPKQVK FWFQNKRTQT KVYI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089349.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028126569.1	2e-30	homeobox-leucine zipper protein ROC8-like
Swissprot	Q7Y0V7	1e-27	ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBL	W9SDT9	7e-56	W9SDT9_9ROSA; Homeobox-leucine zipper protein ROC6
STRING	XP_010089349.1	1e-56	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18826	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	6e-27	HD-ZIP family protein

Link Out ? help Back to Top
Entrez Gene	21384030