PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010089399.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRF

Protein Properties

Length: 430aa MW: 46697.8 Da PI: 8.1462

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089399.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.7	6.5e-26	178	222	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e+ XP_010089399.1 178 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHMHRGRNRSRKPVET 222 79****************************************996 PP
2	QLQ	52.3	1.8e-18	100	136	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+++y++a++ vPpeLlq+i+k XP_010089399.1 100 SYFSLAQWQELELQALIFRYMLAGAAVPPELLQPIKK 136 79*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.7E-11	100	136	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.689	101	136	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.6E-13	101	134	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.376	178	222	IPR014977	WRC domain
Pfam	PF08879	4.4E-22	179	221	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MDFHLKQWRN QQYESEQEEQ EQEQHSAKIP KLLLDHHQQQ PHQIKPEPSP VSSALPLFVP 60 DHHHQPNNKI IPTHLSVAFP DQSTTTTPVS SSRHHPRMGS YFSLAQWQEL ELQALIFRYM 120 LAGAAVPPEL LQPIKKSFNL LHNPPYFLHH PTLQPYAHHF QPAAALFQTG YWGRAAMDPE 180 PGRCRRTDGK KWRCSRDVVV GQKYCERHMH RGRNRSRKPV ETPTSVAGRV SGVGAASGGG 240 GGGTLSSSSA TAAGGSPLGT ASGGTHFALS GPSSSIDLLH LNRSSSDVSN KRESKDLFEP 300 HNEVSGSDGK SGGHILRHFF DDWSRSLQEA SSMNSSTTSL SISMPGNSSS DVSLKLSTGD 360 GDGPAQQDGH MGRDHHPQLG WATVWGASPM TPMGGPLAEA LRSSNSNSSP TSVLHQLPRG 420 SASESCIVSS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MDFHLKQWRN QQYESEQEEQ EQEQHSAKIP KLLLDHHQQQ PHQIKPEPSP VSSALPLFVP  60
DHHHQPNNKI IPTHLSVAFP DQSTTTTPVS SSRHHPRMGS YFSLAQWQEL ELQALIFRYM  120
LAGAAVPPEL LQPIKKSFNL LHNPPYFLHH PTLQPYAHHF QPAAALFQTG YWGRAAMDPE  180
PGRCRRTDGK KWRCSRDVVV GQKYCERHMH RGRNRSRKPV ETPTSVAGRV SGVGAASGGG  240
GGGTLSSSSA TAAGGSPLGT ASGGTHFALS GPSSSIDLLH LNRSSSDVSN KRESKDLFEP  300
HNEVSGSDGK SGGHILRHFF DDWSRSLQEA SSMNSSTTSL SISMPGNSSS DVSLKLSTGD  360
GDGPAQQDGH MGRDHHPQLG WATVWGASPM TPMGGPLAEA LRSSNSNSSP TSVLHQLPRG  420
SASESCIVSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089399.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089399.1	0.0	growth-regulating factor 3
TrEMBL	W9R437	0.0	W9R437_9ROSA; Uncharacterized protein
STRING	XP_010089399.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7895	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	3e-62	growth-regulating factor 4

Link Out ? help Back to Top
Entrez Gene	21396956