PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089599.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 121aa    MW: 14519.8 Da    PI: 9.1134
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089599.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.8e-1214971387
                    TT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3 13 sgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87
                    ++rl++pk+  e +      +++ + +++l   d  g  We+++ +r+k++    ++ ++GW +Fv+ +gL++gD+v+++ +++
  XP_010089599.1 14 RSRLSVPKEWWEIIrplfgeELDRRHEIELWAVDGVGMFWEFRCAVRQKGRYkkpVLQSEGWLKFVNYKGLRAGDVVILETVEN 97
                    46799****996669999998888899999999999********8744444456566779********************7654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-13698IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-13698IPR015300DNA-binding pseudobarrel domain
CDDcd100175.18E-108110No hitNo description
PfamPF023624.9E-91597IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAGLPKWMTE CDVRSRLSVP KEWWEIIRPL FGEELDRRHE IELWAVDGVG MFWEFRCAVR  60
QKGRYKKPVL QSEGWLKFVN YKGLRAGDVV ILETVENQFR GTRFLLRALK YHAEGHYWYD  120
V
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9QTG05e-84W9QTG0_9ROSA; Uncharacterized protein
STRINGXP_010089599.19e-85(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778