PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089709.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21983.9 Da    PI: 7.7218
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089709.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.26e-201563250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     i ++s+r+vtfskRr g++KKA E+ +L++aeva i++s +gk y + 
  XP_010089709.1 15 LIADESKRHVTFSKRRMGLFKKAAEINILTGAEVAAIVLSRHGKAYSFR 63
                    6899****************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.07E-21673IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-24665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.45666IPR002100Transcription factor, MADS-box
CDDcd001202.14E-24765No hitNo description
PRINTSPR004042.6E-16828IPR002100Transcription factor, MADS-box
PfamPF003197.8E-211662IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAKQTRGRQK VDMKLIADES KRHVTFSKRR MGLFKKAAEI NILTGAEVAA IVLSRHGKAY  60
SFRTPGAKSF IDDSFVNRNH SPAPAPEDGS RREVELLVDA LSRQEEEKER CEMEAKMMGD  120
GSGDGLGFWW DRPIEVKEAV VKLREKVAER VEAVTMMGKT TPFMSLLNYG GTGDQEDYLV  180
NGGDGGQGAH HGVMYSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A7e-154651475PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B7e-154651475PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016962.19e-96agamous-like MADS-box protein AGL62
TrEMBLW9QR741e-145W9QR74_9ROSA; Agamous-like MADS-box protein AGL62
STRINGXP_010089709.11e-146(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-21AGAMOUS-like 62