PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010089721.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRAS

Protein Properties

Length: 471aa MW: 53136.3 Da PI: 6.5392

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089721.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.2	5.7e-113	78	470	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykal.ppsetsekn....sseelaalklfsevs 88 ++lL++cA+ +s++d ++a++lL+ ls ++sp gd+++Rl+++f +AL +rl++ +s++y+++ +p ++ + + + +++ ++++++ XP_010089721.1 78 RQLLIRCADLISHSDSAAAHRLLSVLSANSSPFGDATERLVHHFSRALFHRLNNtttITSTTYSSIlRPDVHDTVEaesdIEAVHSSYLTLNQIT 172 89*************************************************9322234444444333333333343323333334445* PP GRAS 89 PilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 P+++f+hltaNqaIl+a++ +++Hi+D+di++GlQWp+++qaLa+Rp++ p lR+T+ g + l++tg+rL +fA++lg++f+f++l+ XP_010089721.1 173 PFIRFCHLTANQAILDAIDDGqQALHILDLDIMHGLQWPPFMQALADRPSP-PFLRVTATGT----DLSLLRRTGDRLLRFANSLGLRFQFHPLH 262 **************8654999*******************976.9*****....9***********************7 PP GRAS 183 akrledl....eleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfd 269 +++ +dl + ++L + p+EalaVn+vl lhrll+ s ++++ + ++L+++k l+Pkvv+++e+ea++ns+ F+ f+eal++y+a+fd XP_010089721.1 263 HHHDHDLplllSSSALVLFPDEALAVNCVLFLHRLLRFSDQQRNlVILSFLNTIKALNPKVVTIAEREANLNSHipaLFMPTFVEALDHYTAIFD 357 7766666555689999****************988888887889*********************97778************* PP GRAS 270 sleaklpreseerikvErellgreivnvva........cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355 slea+lp+ s++r vE+ +l+ ei +vva e ++rr + +++e W+ +l+++GF++v+ls +a +qaklllr ++ s+gyr+ + XP_010089721.1 358 SLEATLPPSSRDRLAVEQIWLASEILEVVAggaednnnIEDERRRRKAQRYEAWEVMLGRSGFSNVALSPFALSQAKLLLRLHYpSEGYRLRILN 452 *************************9443333322445577778899**************************************** PP GRAS 356 gslvlgWkdrpLvsvSaW 373 s++lgW++rpL+svS+W XP_010089721.1 453 SSFFLGWQNRPLFSVSSW 470 **************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.957	51	450	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-110	78	470	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MLMGSFNSRE EDQGEEELEA AATNIRDLEI YHRQHQHQHQ HQQQPIISSI SADRIDLTAP 60 PPPAVAPPPL PNAALHIRQL LIRCADLISH SDSAAAHRLL SVLSANSSPF GDATERLVHH 120 FSRALFHRLN NTTTITSTTY SSILRPDVHD TVEAESDIEA VHSSYLTLNQ ITPFIRFCHL 180 TANQAILDAI DDGQQALHIL DLDIMHGLQW PPFMQALADR PSPPFLRVTA TGTDLSLLRR 240 TGDRLLRFAN SLGLRFQFHP LHHHHDHDLP LLLSSSALVL FPDEALAVNC VLFLHRLLRF 300 SDQQRNLVIL SFLNTIKALN PKVVTIAERE ANLNSHIPAL FMPTFVEALD HYTAIFDSLE 360 ATLPPSSRDR LAVEQIWLAS EILEVVAGGA EDNNNIEDER RRRKAQRYEA WEVMLGRSGF 420 SNVALSPFAL SQAKLLLRLH YPSEGYRLRI LNSSFFLGWQ NRPLFSVSSW H

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MLMGSFNSRE EDQGEEELEA AATNIRDLEI YHRQHQHQHQ HQQQPIISSI SADRIDLTAP  60
PPPAVAPPPL PNAALHIRQL LIRCADLISH SDSAAAHRLL SVLSANSSPF GDATERLVHH  120
FSRALFHRLN NTTTITSTTY SSILRPDVHD TVEAESDIEA VHSSYLTLNQ ITPFIRFCHL  180
TANQAILDAI DDGQQALHIL DLDIMHGLQW PPFMQALADR PSPPFLRVTA TGTDLSLLRR  240
TGDRLLRFAN SLGLRFQFHP LHHHHDHDLP LLLSSSALVL FPDEALAVNC VLFLHRLLRF  300
SDQQRNLVIL SFLNTIKALN PKVVTIAERE ANLNSHIPAL FMPTFVEALD HYTAIFDSLE  360
ATLPPSSRDR LAVEQIWLAS EILEVVAGGA EDNNNIEDER RRRKAQRYEA WEVMLGRSGF  420
SNVALSPFAL SQAKLLLRLH YPSEGYRLRI LNSSFFLGWQ NRPLFSVSSW H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-59	81	470	23	378	Protein SCARECROW
5b3h_A	1e-59	81	470	22	377	Protein SCARECROW
5b3h_D	1e-59	81	470	22	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089721.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089721.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-118	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	W9QIY5	0.0	W9QIY5_9ROSA; Uncharacterized protein
STRING	XP_010089721.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-113	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	21397076

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]