PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010089818.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NF-YB

Protein Properties

Length: 170aa MW: 19288.9 Da PI: 4.3484

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089818.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	46.5	8.7e-15	8	102	5	94
NF-YB 5 drflPianvsrimkkvlP...ana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++lP a v r++k l a+a + kd+ t e + fi ++++ a+d c++ kr+tingdd++ al ++ f ++++pl++ l ++++ + XP_010089818.1 8 AEELPKAIVRRVVKDKLSrcsADAdiNVHKDTLLTFSESARIFIHYLSATANDICKESKRQTINGDDVFKALEEIEFSEFLKPLQASLDEFKKRN 102 5689********9986332444115678999999**************************************************9998755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-30	7	159	IPR009072	Histone-fold
Pfam	PF00808	1.2E-9	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.62E-23	11	123	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MEKAVSEAEE LPKAIVRRVV KDKLSRCSAD ADINVHKDTL LTFSESARIF IHYLSATAND 60 ICKESKRQTI NGDDVFKALE EIEFSEFLKP LQASLDEFKK RNAGKKKGAS QSEDVKKKRK 120 LEDEPSDKKD GSESKQDEND EDKDNENDED KDNENDEDKD NENDDGTGDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	119	KKKGASQSEDVKKKRK
2	115	120	KKKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089818.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089818.1	1e-117	DNA polymerase epsilon subunit 3
TrEMBL	W9QJ55	1e-115	W9QJ55_9ROSA; DNA polymerase epsilon subunit 3
STRING	XP_010089818.1	1e-116	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	4e-44	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Entrez Gene	21405152