PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010089911.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 496aa MW: 53978 Da PI: 7.1497

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089911.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	7.9e-40	127	187	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss XP_010089911.1 127 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 187 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	120	184	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	129	185	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	131	185	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	133	169	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MLESKDPAIK LFGKKIAVPA DDEARAVSGE ELASQPLEKE DVNEEETETE MKDSPPRSAS 60 ENSGQDSDPP SETEDSINPE TLPDSSNVNP KTPSVNEESA KSNIAKIDNE KNNASAANAQ 120 EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKA CQRYWTAGGT MRNVPVGAGR 180 RKNKNSSSHY RHITISEALQ AARIEAAPPN GTHPHHHHHH HHHHHPALKS NGRVLSFALD 240 APICDSMASV LNLTDNKKAP RNGFHKTEER GFPGPCKGRE NGDDCSSASS ITVSNSMDEV 300 GRNSTQEPQV HNMNGFSSIP CIPGVPWPYP WNSAVPPPPP PPPPFCPPGF PMSFYPAAYW 360 NCAVPGTWNI PWFAPPQPSS PSQNSPSLGS NSPTLGKHSR DGEILKSDSL EKEEPSKPKN 420 GSVLVPKTLR IDDPTEAAKS SIWATLGIKN DGISGGGMFK AFQSKSDEKK SMAETSPVLR 480 ANPAALSRSL KFHESS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MLESKDPAIK LFGKKIAVPA DDEARAVSGE ELASQPLEKE DVNEEETETE MKDSPPRSAS  60
ENSGQDSDPP SETEDSINPE TLPDSSNVNP KTPSVNEESA KSNIAKIDNE KNNASAANAQ  120
EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKA CQRYWTAGGT MRNVPVGAGR  180
RKNKNSSSHY RHITISEALQ AARIEAAPPN GTHPHHHHHH HHHHHPALKS NGRVLSFALD  240
APICDSMASV LNLTDNKKAP RNGFHKTEER GFPGPCKGRE NGDDCSSASS ITVSNSMDEV  300
GRNSTQEPQV HNMNGFSSIP CIPGVPWPYP WNSAVPPPPP PPPPFCPPGF PMSFYPAAYW  360
NCAVPGTWNI PWFAPPQPSS PSQNSPSLGS NSPTLGKHSR DGEILKSDSL EKEEPSKPKN  420
GSVLVPKTLR IDDPTEAAKS SIWATLGIKN DGISGGGMFK AFQSKSDEKK SMAETSPVLR  480
ANPAALSRSL KFHESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089911.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089911.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-117	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	W9QRU1	0.0	W9QRU1_9ROSA; Dof zinc finger protein
STRING	XP_010089911.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-102	cycling DOF factor 3

Link Out ? help Back to Top
Entrez Gene	21391960

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]