PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089974.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 691aa    MW: 75568.3 Da    PI: 8.01
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089974.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.97.9e-23113214199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW++Fv++++L +gD++vF   +++
  XP_010089974.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGGLWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RTE 203
                     89****************************996555555..8************************************************..458 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++  +v+++r+
  XP_010089974.1 204 TGDICVGIRRA 214
                     9999****996 PP
2Auxin_resp86.65e-29275343168
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd 68 
                     aa +a+++++FevvY+Pr+st+eF+vk++ v+ a++++++ GmRfkmafetedss++++ +Gt+ +v+ 
  XP_010089974.1 275 AAVRAANGQPFEVVYYPRVSTPEFCVKASAVKGAMRIQWCSGMRFKMAFETEDSSRISWfMGTINSVHV 343
                     567899************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-36104216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-28110216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-20112213No hitNo description
PROSITE profilePS5086312.731113215IPR003340B3 DNA binding domain
PfamPF023627.7E-21113214IPR003340B3 DNA binding domain
SMARTSM010193.1E-21113215IPR003340B3 DNA binding domain
PfamPF065072.9E-23276343IPR010525Auxin response factor
PROSITE profilePS5174518.925579659IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MREVVEKSLD PQLWQACAGG MVNIPPMNSK VFYFPQGHAE HAQAHVDFPA SMRIPSFVLC  60
RVASLKFMAD PETDEVFAKM RLLPLGNNEL DSDDDKVLGS ADGSENPEKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVVAKDVHG GLWKFRHIYR GTPRRHLLTT  180
GWSNFVNQKK LVAGDSIVFL RTETGDICVG IRRAKRGIGG GPEPPSGWNN GYGGFSVFLR  240
EDESKMGRNG CGNSSPGGGN MRGTGRVRPE AVVEAAVRAA NGQPFEVVYY PRVSTPEFCV  300
KASAVKGAMR IQWCSGMRFK MAFETEDSSR ISWFMGTINS VHVTWDEPDL LHNVKRVNPW  360
LIESVSNMPI IPLSSFSPPR KKLRLPQHPD FTLDGQFLVP SFLGNPLGPS SPMCYLPDNT  420
PAGIQGARHA LFGISLSDLH LNNKLQSGLF HSSFQQLNQH SRISNEIITG NANRNESLSS  480
LLTMGNSTQN LEKSDSVKLK RHQFVLFGQP ILTEQQISNN GSSDTVSEVS NGKSLTDGNP  540
EGAKFHSNGS GSLPEQQASS NTGISWLKGL QATEFGLDTG HCKVFMESED VGRVLDLSVL  600
GSYEELYRRL ANMFGIERSE MLSHVLYHDA TGAVKRTGDE PFSDFMKTAK RLTILTDSGS  660
KNMGRARITG MRNAENGLGA SNKTGPLSIF A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-68936451389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0726442e-95KR072644.1 Boehmeria nivea auxin response factor (ARF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017098.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLW9QJR00.0W9QJR0_9ROSA; Auxin response factor
STRINGXP_010089974.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]