PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089977.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 622aa    MW: 67923.5 Da    PI: 5.7349
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089977.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.83.2e-21109207398
                     EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     kvlt+sd+++ g +++pk  ae+         ++  ++ ++l+++d +g++We+k+iyr++++r++lt+GW+ Fv+  +L +gD+vvF   ++++
  XP_010089977.1 109 KVLTQSDSNNGGGFSVPKYLAETVfpkldyltDS--PC-QQLSVRDVHGEVWEFKHIYRGSPRRHLLTTGWSVFVNKRKLVAGDSVVFV--RDKD 198
                     89*******************999**99986433..34.48************************************************..5588 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++  v++ r
  XP_010089977.1 199 GNISVGIKR 207
                     888998876 PP
2Auxin_resp93.14.4e-31235318183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ a+++++F+vvY+Pr +++eF+v+++ v++al +++s+GmRfkm  e + ss++++  Gt+++vs +dp++WpnS+Wr L+
  XP_010089977.1 235 AVTLAANGKPFDVVYYPRDGAAEFCVRASAVRAALGISWSIGMRFKMPSEDDYSSRISWsLGTIASVSPADPIHWPNSPWRFLQ 318
                     678999*****************************************************99********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-31105210IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-19105207No hitNo description
SMARTSM010193.0E-18106209IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379107209IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-27108233IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-19109207IPR003340B3 DNA binding domain
PfamPF065073.7E-27235318IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MKTKILDALV WQALAGRMAQ VPRVNSKVFY CPQGHAEHAF ATADFAASLG VPPLLLCRVS  60
AVELMVDLET EEVFAKISLV PLGQEDGLPD GDDDNGIPAA AEGSCFVGKV LTQSDSNNGG  120
GFSVPKYLAE TVFPKLDYLT DSPCQQLSVR DVHGEVWEFK HIYRGSPRRH LLTTGWSVFV  180
NKRKLVAGDS VVFVRDKDGN ISVGIKRGRR TYCNSNNNNN GSAKGVVSPQ DVLEAVTLAA  240
NGKPFDVVYY PRDGAAEFCV RASAVRAALG ISWSIGMRFK MPSEDDYSSR ISWSLGTIAS  300
VSPADPIHWP NSPWRFLQVS WDEPDLKQNV QRVNPWLIEL ISNAPMVNFS SYSPPGKKLR  360
LAQQSDFTLD SQYPALSSLG NTLGPSNPLC YPPDNTPVGI QGARHVLFGV PLLDLQVNDP  420
LQLRIFPPNV QLSNQLSTSP NSVIAGQTHD NESLSSLLTV GNSSPSLEKS DGVKTHHFIL  480
FGHPIVTEQQ GSPSSSGDAV SHDFGKSPVD GNTDREKYIP NGSGPTLQGT EFGLDTGRCK  540
VFMESEDAGW TLDLSVLGSY EELYRSLADL SGIERSEMLI RVLYYDATGA PKRTGDEPFR  600
HCSAFHFFHP LFFILRCNVE SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-74233947388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089977.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLW9QUH20.0W9QUH2_9ROSA; Auxin response factor
STRINGXP_010089977.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-176auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]