PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090029.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 316aa    MW: 34315.4 Da    PI: 10.0206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090029.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.2e-13110154347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I++   ++Rt+ q+ s+ qky
   XP_010090029.1 110 PWTEEEHRIFLIGLEKLGKGDWRGISKNYVTTRTPTQVASHAQKY 154
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.007103159IPR017930Myb domain
SuperFamilySSF466899.33E-18104160IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-18106158IPR006447Myb domain, plants
SMARTSM007177.1E-10107157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-11107153IPR009057Homeodomain-like
PfamPF002493.8E-11110154IPR001005SANT/Myb domain
CDDcd001673.36E-9110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTN YYKASATFVG GSLRLFGVQL DMYSSSSSIS IKKSFSMDCL  60
NSSSSPSSSP SSSMSSRIAL DEASHLDKAS IGYLSDGLIC RAQERKKGVP WTEEEHRIFL  120
IGLEKLGKGD WRGISKNYVT TRTPTQVASH AQKYFLRQAS LNKKKRRSSL FDMVGTSNSM  180
VVGSSPLNSS NFKPSDDYPI PNNFSQPKAQ SLVSDNPKPD DFCPQIASSS SSSSSSSFSH  240
HTHHHHHHSV PVWIHGLINP QMKSNPNAAN KPIMTSSNAA SAPDLELKLA GPTRPNLEQN  300
NKSSSGHLFV GPITVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090029.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090029.10.0transcription factor KUA1
SwissprotQ7XC571e-50MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLW9QJW20.0W9QJW2_9ROSA; Transcription factor
STRINGXP_010090029.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-53MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]