PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010090066.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 1064aa MW: 117191 Da PI: 6.5463

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090066.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.3e-06	545	565	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ Gd+CkF+H+ XP_010090066.1 545 YCRHYLN-GRCQEGDNCKFSHD 565 69999.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00018	0	411	423	IPR018247	EF-Hand 1, calcium-binding site
SMART	SM00356	4.6E-4	539	566	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	540	565	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.591	540	567	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	545	565	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.479	569	596	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-4	569	595	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.12	597	621	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.11E-6	598	638	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.709	599	622	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence Send to blast
MEETQIETVK TSDKLVFFPP HRRRHLKSET YRTLVRIFSQ FCDESPSSLA THNVDHELNT 60 ENGGDEFGQT TEKQASQQVE LVRNDSMEAK SLVFEKECEV TLSGDNNGSQ DRRLNEQMTI 120 NQIEQLMRLD ENDGLSNQKA EIGFQNPGIG PEQMLIDELE HIVKGKRAIV LENNLKPPQI 180 PLVENRSDIN EDELLYHKEE HVDLRQSGIK RSVSACQTLS SSDDDIRIGG SASPREKGEN 240 IHSLLNNEVM LLNNSSIAFN ESGEVEKAKN HAQKGCEDSN LLLDKNTVAD TLDASNNNDG 300 QGSPKADALK VDHEMPVKDK ELENPVCGGD TVGSAGHMTE DVDMEEGEIS GYYSMDDISM 360 DTLLQDAEVL EGKRESEEPL NRCLKDKREF LGDEPNEADS GSTFFAFDKV DKNNNGAVGL 420 REIDFSKTIC ATDIVVHKET LGAGKLDVND SVPPAQKIEK KGTEGINNVV LCGRILEDDA 480 TRHYKVSTQK EDSKVHLKRK RGPSTKENKA KKKAKERKKR AEKNRQLGVK RLKLPLISKP 540 KTVSYCRHYL NGRCQEGDNC KFSHDIVPLT KSKPCCYFAR QQCMKGDDCP FDHELSKYPC 600 SNFVSKGFCS RGDDCMFSHK IVAKDGSITV SKAMETEMKL ASSMDNSMSK KQQKNDGAFH 660 HTSSLLSYSK QMCSQKNPEK NVKETVSKQS EMVAKGTSFL SIVANAPLGD SNKLKQQILS 720 PNNENRSEQS GSSVVQNSNE ILSKTPPVVA PKGINFLAFG VQRDDLSCRK SGSVSSSGDS 780 GAVQNSNEIL NRTPPVVAPK GINFLAFGVQ RDDLSSRKLG STSSSQDNGV KLSPLENSNT 840 HNQNSSASYS NLMLKGIQPA AVPKGISFLS FGKGSTDDSC NKGKAVLASS LDNGTDICVK 900 GKEKALDEPK LSITTSSDLA SSIISQVQSS SSSASRIFKD TPHSAQMALL STLAFAAKCE 960 SRTKLNQSNR DPSVATETDK DTRHKGVIGC SQDDLAKASK ILEFLSSIGS KILEHSSRNM 1020 EFIVLALVWH KKRFFLLFSF TTVTQAIEEG LTRGPPLFLM YMWD

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence Send to blast

MEETQIETVK TSDKLVFFPP HRRRHLKSET YRTLVRIFSQ FCDESPSSLA THNVDHELNT  60
ENGGDEFGQT TEKQASQQVE LVRNDSMEAK SLVFEKECEV TLSGDNNGSQ DRRLNEQMTI  120
NQIEQLMRLD ENDGLSNQKA EIGFQNPGIG PEQMLIDELE HIVKGKRAIV LENNLKPPQI  180
PLVENRSDIN EDELLYHKEE HVDLRQSGIK RSVSACQTLS SSDDDIRIGG SASPREKGEN  240
IHSLLNNEVM LLNNSSIAFN ESGEVEKAKN HAQKGCEDSN LLLDKNTVAD TLDASNNNDG  300
QGSPKADALK VDHEMPVKDK ELENPVCGGD TVGSAGHMTE DVDMEEGEIS GYYSMDDISM  360
DTLLQDAEVL EGKRESEEPL NRCLKDKREF LGDEPNEADS GSTFFAFDKV DKNNNGAVGL  420
REIDFSKTIC ATDIVVHKET LGAGKLDVND SVPPAQKIEK KGTEGINNVV LCGRILEDDA  480
TRHYKVSTQK EDSKVHLKRK RGPSTKENKA KKKAKERKKR AEKNRQLGVK RLKLPLISKP  540
KTVSYCRHYL NGRCQEGDNC KFSHDIVPLT KSKPCCYFAR QQCMKGDDCP FDHELSKYPC  600
SNFVSKGFCS RGDDCMFSHK IVAKDGSITV SKAMETEMKL ASSMDNSMSK KQQKNDGAFH  660
HTSSLLSYSK QMCSQKNPEK NVKETVSKQS EMVAKGTSFL SIVANAPLGD SNKLKQQILS  720
PNNENRSEQS GSSVVQNSNE ILSKTPPVVA PKGINFLAFG VQRDDLSCRK SGSVSSSGDS  780
GAVQNSNEIL NRTPPVVAPK GINFLAFGVQ RDDLSSRKLG STSSSQDNGV KLSPLENSNT  840
HNQNSSASYS NLMLKGIQPA AVPKGISFLS FGKGSTDDSC NKGKAVLASS LDNGTDICVK  900
GKEKALDEPK LSITTSSDLA SSIISQVQSS SSSASRIFKD TPHSAQMALL STLAFAAKCE  960
SRTKLNQSNR DPSVATETDK DTRHKGVIGC SQDDLAKASK ILEFLSSIGS KILEHSSRNM  1020
EFIVLALVWH KKRFFLLFSF TTVTQAIEEG LTRGPPLFLM YMWD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	498	519	RKRGPSTKENKAKKKAKERKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090066.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017174.1	0.0	uncharacterized protein LOC21409920 isoform X1
TrEMBL	W9QS75	0.0	W9QS75_9ROSA; Zinc finger CCCH domain-containing protein 65
STRING	XP_010090066.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6650	23	23

Link Out ? help Back to Top
Entrez Gene	21409920