PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090083.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 281aa    MW: 31152.9 Da    PI: 8.7648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090083.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-14555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l+ +v+++G+g Wk I r        ++R+  ++k++w++
   XP_010090083.1  5 KQKWTSEEEEALKAGVAKHGTGKWKDIQRDPEfnpylLNRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.154160IPR017930Myb domain
SuperFamilySSF466891.29E-16258IPR009057Homeodomain-like
SMARTSM007172.6E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-15556IPR009057Homeodomain-like
PfamPF002491.4E-9555IPR001005SANT/Myb domain
CDDcd116609.44E-22656No hitNo description
SMARTSM005262.3E-1381181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.627118186IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.8E-14118190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-13122191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.6E-9122179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALKAGV AKHGTGKWKD IQRDPEFNPY LLNRSNIDLK DKWRNMSCSA  60
NGQGPREKSR NSKAKANTDV PAAQPSAAQT ATTVPAARDA AAAPNLDDSS KGASDGKNFS  120
MYNQMIFEAL STLKEPNGLE TSAIVSFIEQ RHEVPQNFRR LLSTRLRRLV AQDKLEKIQN  180
CYKMKSDADE KLQHKDASFG TKTPVPKVEN KPRQFQNSTY RAPNDSVEEA AIAAAYKIAE  240
AENKSFVAAE AVKEAERISE MAEETGSVLQ LAKEIFEKCN S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090083.20.0telomere repeat-binding factor 4
TrEMBLW9QJT50.0W9QJT5_9ROSA; Histone H1
STRINGXP_010090083.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-52MYB_related family protein