PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010090128.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MYB

Protein Properties

Length: 341aa MW: 38058.2 Da PI: 6.9897

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090128.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d++k +G g+W+ +++ g++R++k+c++rw++yl XP_010090128.1 14 RGAWTAVEDKILIDYIKTHGEGRWRNLPQKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	53	7.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_010090128.1 67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.036	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.88E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	7.55E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.378	62	116	IPR017930	Myb domain
SMART	SM00717	5.3E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	3.36E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGRNPCCSKE GLNRGAWTAV EDKILIDYIK THGEGRWRNL PQKAGLKRCG KSCRLRWLNY 60 LRPNIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVQLDR 120 HHQQNTTNST GNKKQYHPSR KFTKLTNDPS SSGGSASPSN KTATATQVVR TKAAKCTRVI 180 LNHPQPHRIG HGRDLHADKE STSPYNLKGD YDISNCEKPV LAAGTSNPTS DIGQDDQNNI 240 SAAADFAVNL NPAAAAVDDE LCLADILNSD YQVSDFLPEY YNSTNYGDVQ SSSSTDLSDL 300 LFSEEMLVQD RSDVRALNAG LEFEYFSSVL FDGDEENWLT D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090128.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090128.1	0.0	transcription repressor MYB6
TrEMBL	W9QJX8	0.0	W9QJX8_9ROSA; Anthocyanin regulatory C1 protein
STRING	XP_010090128.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-61	myb domain protein 3

Link Out ? help Back to Top
Entrez Gene	21409982