PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090245.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 117aa    MW: 13366.2 Da    PI: 10.7218
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090245.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.5e-173103199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f k lt+ dv ++  l++p++f++e+  +++ + ++l +++++g  W+++++  r +s+r   v ++GW +Fv++ +L++gD + ++ +g+ e++
  XP_010090245.1   3 FTKSLTQTDVESK--LMVPNEFFREFpPSQNGGAVDLLVRNQNGLMWTFRMSSiRAGSNRskLVVSAGWLSFVRDRKLQSGDCLSIYKEGSGERT 95 
                     8899999999987..89*********977778999****************7775555555699***********************88888888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     +++ v r+
  XP_010090245.1  96 YRIEVKRR 103
                     99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.4921104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-162102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-182102IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-133103IPR003340B3 DNA binding domain
CDDcd100175.39E-173102No hitNo description
SMARTSM010193.7E-113104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MVFTKSLTQT DVESKLMVPN EFFREFPPSQ NGGAVDLLVR NQNGLMWTFR MSSIRAGSNR  60
SKLVVSAGWL SFVRDRKLQS GDCLSIYKEG SGERTYRIEV KRRERGKGSD GEWTRLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090245.13e-81B3 domain-containing transcription factor NGA4
TrEMBLW9R6P26e-80W9R6P2_9ROSA; B3 domain-containing transcription factor NGA4
STRINGXP_010090245.11e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-10B3 family protein