PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090255.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 700aa    MW: 79571.8 Da    PI: 6.4167
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090255.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.98.5e-16123185269
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                     W+++evlaL+++r+ me+++ +       We+vs+k++e gf+rs ++Ckek+e+ ++++ +i++  k
  XP_010090255.1 123 WSNDEVLALLRIRSTMENWFPDF-----TWEHVSRKLSEIGFKRSGEKCKEKFEEESRYFNNINNCTK 185
                     ********************998.....9********************************9998665 PP
2trihelix92.54.3e-29528620186
        trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++evlaLi++r ++ ++    +         k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  XP_010090255.1 528 RWPRDEVLALINLRCSLYNSGDHIQekegsnsvVKAPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVESRTCPYFHQLS 620
                     8**************6666665322223445559********************************************8.67778*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.342115174IPR017877Myb-like domain
SMARTSM0071713119176IPR001005SANT/Myb domain
PfamPF138377.6E-10121183No hitNo description
SMARTSM007170.5525595IPR001005SANT/Myb domain
PfamPF138371.6E-18527620No hitNo description
CDDcd122033.57E-24527600No hitNo description
PROSITE profilePS500906.353528593IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MFDGVPPHDQ LHQFIASSRA AAAASPLPLP LSSSPLHSQT AFSTNSFDVS AYNIIPHHHQ  60
LLLPHQQHQQ PQFVHPILLH QSSNNNSHKS SINNEEKEAS NLVEIERERS VPEPNNTIDD  120
PAWSNDEVLA LLRIRSTMEN WFPDFTWEHV SRKLSEIGFK RSGEKCKEKF EEESRYFNNI  180
NNCTKSCRFL CTDHLEVEEE EEVEEGLNYH TQNPAHQTNI IGTQKRQIIS VVLPENQDKV  240
RGATGTGNGT AQISLEDQLG SPRNHDHDHH QTFNGSAKES DHDLENDHHD SSSTRSKSKK  300
RKRQKIKFEM FKGFCEDIVS KMMSQQEEMH NKLVEDMVKR DKEKVEKEEA WKKQEMDRMN  360
KELDIMAHEQ AIAGDRQATI IDFLNKFISS SSSGTITTTT TTISSESDHH INHFSGPKKG  420
KDSLDKAVLV KNTPKNHTDF SLTPLIQAAH GSLNDLEEQN NSNIVVEEQP SSSAMIVRPQ  480
NSSLSTQKNV ISEQPQQNPT SSPTKNPSST TSTQKVAIND IKDDVGKRWP RDEVLALINL  540
RCSLYNSGDH IQEKEGSNSV VKAPLWERIS QGMSELGYKR SAKRCKEKWE NINKYFRKTK  600
DVNKKRSVES RTCPYFHQLS TLYNKGTLVA PNSQGPDQEM NHHSSQLESL ADHDHDDHDD  660
DDHHHHSSDV HVAEGERSPH NHVVVVHHQE VVPAAFDFEF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-37AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090255.10.0trihelix transcription factor GTL2 isoform X2
TrEMBLW9R6Q30.0W9R6Q3_9ROSA; Trihelix transcription factor GTL2
STRINGXP_010090255.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-56Trihelix family protein