PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090366.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17557.1 Da    PI: 8.1921
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090366.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF374.5e-127451250
                    HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +f  Rr ++ KKA+EL   C +ev+vi f+++g l  ++
  XP_010090366.1  7 SFEGRRSTLKKKASELADRCKVEVCVICFGPNGDLEVWP 45
                    7899*******************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.194741IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-14769IPR002100Transcription factor, MADS-box
PfamPF003192.6E-10744IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDKSAKSFEG RRSTLKKKAS ELADRCKVEV CVICFGPNGD LEVWPEKPTK AQSIIEKYKE  60
ASKKGNKCKR KEKLNLSDVL ESKIKSLEKQ LREEETNWDF SDNGTGGLSL WDEELDKLTE  120
NSLKSLSDCL EAKIRMIELI KGKQTMPSND FSMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090366.11e-107agamous-like MADS-box protein AGL103
TrEMBLW9R6Z61e-106W9R6Z6_9ROSA; Uncharacterized protein
STRINGXP_010090366.11e-106(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1547579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.19e-14AGAMOUS-like 103