PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090447.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 902aa    MW: 99612.3 Da    PI: 6.3737
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090447.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   +++
  XP_010090447.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010090447.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp120.31.4e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  XP_010090447.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100179.60E-21126227No hitNo description
PfamPF023622.1E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337127229IPR003340B3 DNA binding domain
SMARTSM010191.7E-23127229IPR003340B3 DNA binding domain
PfamPF065079.9E-35253336IPR010525Auxin response factor
PfamPF023099.8E-7760858IPR033389AUX/IAA domain
SuperFamilySSF542777.85E-7765844No hitNo description
PROSITE profilePS5174523.064769853IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MRLSSVGFSP QPQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPAFHGIKED DLGMNSPLMW LRGDYGDRGL QAMNFQGIGV  420
TPWMQPRVDA SMLGLQPDMY QAMAAAALQE MRAVDPSKPI PTSLLQFQQT QNLPSRSASL  480
MQPQMLHQSQ TQQPFLQGVP ENQPQPQPQT PPHLLQQQLQ HQHSFNNQQL QQQQPQPSQQ  540
QQLVDHQQIP SVVSPMSHYL SASQSQSPSL QAISSMCQQP NFSDSNGTAV TSSIVSPLHS  600
ILGSFPPPDE ASHLLNLPRS NLSSAVWPSK RAAVEPLIAA GPTQCALPQV EQLGPPQTNL  660
SPNSVSLPPF PGRECAIDQE GNTDPQSHLL FGVNIEPSSL LMQNGISNLR GVGSESDSTT  720
IPFPSSSYMS TTGTNFSLNP AAIAPSSCID ESGFLQSPEN AGQGNNPNRT FVKVHKSGSF  780
GRSLDITKFS SYNELRGELA RMFGLEGELE DPVRSGWQLV FVDRENDVLL LGDDPWPEFV  840
NSVWCIKILS PQEVQQMGKR GLELLNSVSI QRLANNSCDD YPSCEDSRNL SSGITSVGSL  900
DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090447.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9QT990.0W9QT99_9ROSA; Auxin response factor
STRINGXP_010090447.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]