PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010090516.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

YABBY

Protein Properties

Length: 190aa MW: 21100.8 Da PI: 8.5063

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090516.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	221.5	2.5e-68	6	159	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +slf++vtvrCGhC +llsvn++ as ++ ++ +++ ++e+ +k++ ++++++++ + XP_010090516.1 6 MASERVCYVHCNFCNTILAVSVPCSSLFTIVTVRCGHCGNLLSVNMEAASLQTVPPQD--------PQKQISSSENPVKEYGSSSKCNKHAN--- 89 689****************************************9988755444433........34445555556665555554443333... PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 l e+ d+e p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_010090516.1 90 -LLESVDHEQPARSSPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159 .3334444444444459**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.9E-73	7	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.1E-8	101	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.2E-5	106	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLDMMASER VCYVHCNFCN TILAVSVPCS SLFTIVTVRC GHCGNLLSVN MEAASLQTVP 60 PQDPQKQISS SENPVKEYGS SSKCNKHANL LESVDHEQPA RSSPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGTKNKQAK LDQTIPGDHQ 180 GTHQAANGFH

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090516.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090516.1	1e-142	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	3e-76	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	W9QKW0	1e-141	W9QKW0_9ROSA; Uncharacterized protein
STRING	XP_010090516.1	1e-141	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-78	YABBY family protein

Link Out ? help Back to Top
Entrez Gene	21400158

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]