PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090650.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 346aa    MW: 38149.6 Da    PI: 8.6708
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090650.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-4040116278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls++++yhrrhkvCe hsk+p v++ g+e rfCqqCsrfh+l efDeekrsCr+rL++hn+rrrk+q+
  XP_010090650.1  40 CLVDGCKSDLSKCRDYHRRHKVCELHSKTPRVTIGGQELRFCQQCSRFHSLVEFDEEKRSCRKRLDGHNRRRRKPQP 116
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-3332101IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.5337114IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-3838119IPR004333Transcription factor, SBP-box
PfamPF031104.9E-3040113IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEDESKIKLK EPGALDVEPS STFPLKRIRG QSNGIQVPSC LVDGCKSDLS KCRDYHRRHK  60
VCELHSKTPR VTIGGQELRF CQQCSRFHSL VEFDEEKRSC RKRLDGHNRR RRKPQPETFP  120
TNSGGFLSSY QGTRFSPFPS PHIFPSSAMS AALAIAGAAK SESDMALYSS HTQSSGTRKN  180
HPFTGSLSHS YSGAKELSFL QGSSCSLPLA AMSQPLVDSN PALNNSSGHS QKIYSQWLYR  240
DNDNDESNCA LSLLSSTPTD TCKEICLSNM VQQSNSAATR RAQHSIPSLH YRGLGMVSEP  300
LVPSALALDY SASDDLHCQQ MFRIWPDGSS SRGHHHTSPR GSHIPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-2632113584squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196113KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090650.10.0teosinte glume architecture 1
TrEMBLW9QL870.0W9QL87_9ROSA; Squamosa promoter-binding-like protein 16
STRINGXP_010090650.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-45SBP family protein