PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010090819.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NF-YB

Protein Properties

Length: 203aa MW: 23323.3 Da PI: 7.406

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090819.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.3	2.9e-55	13	108	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkk++P+n+kiskdake+vqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfe+yv+plkvyl+kyre+ege XP_010090819.1 13 KEQDRFLPIANVGRIMKKMIPGNGKISKDAKESVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITALGFEHYVNPLKVYLEKYREIEGE 107 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_010090819.1 108 K 108 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-52	11	148	IPR009072	Histone-fold
SuperFamily	SSF47113	3.38E-40	15	137	IPR009072	Histone-fold
Pfam	PF00808	5.2E-28	18	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-19	46	64	No hit	No description
PROSITE pattern	PS00685	0	49	65	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.3E-19	65	83	No hit	No description
PRINTS	PR00615	1.3E-19	84	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MESRSPLSLK TNKEQDRFLP IANVGRIMKK MIPGNGKISK DAKESVQECV SEFISFVTGE 60 ASDKCQREKR KTINGDDIIW AITALGFEHY VNPLKVYLEK YREIEGEKLN NVPKQQRATD 120 YHHHHHHHQQ IRVQQHHNAQ LEVNDQEQQQ ISHVLNFDNL YSPTSLMTQS TPFLAADQAA 180 FSGLLPAFSP NLIRKQLQPQ DVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-45	13	103	2	92	Transcription factor HapC (Eurofung)
4g92_B	8e-45	13	103	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090819.1	1e-152	nuclear transcription factor Y subunit B-3
Swissprot	Q9SIT9	1e-64	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	W9QLR9	1e-151	W9QLR9_9ROSA; Nuclear transcription factor Y subunit B-7
STRING	XP_010090819.1	1e-152	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	5e-65	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Entrez Gene	21403565

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]