PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090845.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 322aa    MW: 36606.6 Da    PI: 10.0268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090845.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171762147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+ +G+ +W+ Ia +++ gR++k+c++rw++ 
   XP_010090845.1 17 RGHWRPAEDEKLRQLVEHYGPQNWNFIADHLQ-GRSGKSCRLRWYNQ 62
                     899*****************************.************96 PP
2Myb_DNA-binding52.89.4e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T+eE+e+l+ a++ +G++ W+ Ia++++ gRt++ +k++++ +
   XP_010090845.1  69 KKPFTEEEEERLLSAHRIYGNK-WACIAKYFQ-GRTDNAVKNHYHVV 113
                      689*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6271267IPR017930Myb domain
SuperFamilySSF466898.99E-3015110IPR009057Homeodomain-like
SMARTSM007172.6E-151665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-271870IPR009057Homeodomain-like
CDDcd001671.64E-142061No hitNo description
PfamPF139212.1E-182080No hitNo description
SMARTSM007176.9E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129419.61168118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2071116IPR009057Homeodomain-like
CDDcd001676.55E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGKSSSSSDH GGKNCYRGHW RPAEDEKLRQ LVEHYGPQNW NFIADHLQGR SGKSCRLRWY  60
NQLDPNINKK PFTEEEEERL LSAHRIYGNK WACIAKYFQG RTDNAVKNHY HVVMARRKRE  120
RFTQYQHHHH HHPRPSTHST STPNHDQGFS NGNIINPTKL GFLNFQSSHN QQKSGVLGIL  180
SSNSSSSTLN ESSTLTRDST STQLDVHGEG RLKDCSPQSL NQLFLRGHGD NNFKIFMAPK  240
SPPPKDVVMS SFGFLNSGIR HGDHGNHEEI TNNNKSKFVR SRVDLPNSTN SVKLLKWGMA  300
NSQQEQQEVP FIDFLGVGIV SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31111171107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090845.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090845.20.0transcription factor CSA
TrEMBLW9QM040.0W9QM04_9ROSA; Transcription factor
STRINGXP_010090845.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.19e-65myb domain protein 69