PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090865.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 954aa    MW: 106287 Da    PI: 9.1473
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090865.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-06249269425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C++f + G C++G++C+F H
  XP_010090865.1 249 VPCNDFVK-GRCRRGASCRFEH 269
                     69******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.92186213IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4188212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5188211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5190214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408245273IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014246271IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054309335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502309336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5312334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MSGSGRKRSS KWDQAQFDDE NAQDDSWHGK SGRSFYPRES GHGWQSPELV GNNGSKWSAL  60
ETNDLRSKRD SVLPSRESRG SHKNENIDKD DKRYVEESMA YKDDKRYVEE SMAWDANEDY  120
GTRMSPGLDE WRHQHPSQSP KSGWSRSLRD RSRSRSRSKS RGRSRSPVRS LRRESGFPDR  180
SRSRSGVSSQ LCKDFIAGRC RRGNHCMFLH EGNEDYDDYW DSRHRKGTSS KYSNLDTRDY  240
PLRSGRPSVP CNDFVKGRCR RGASCRFEHH GVSDGFSKGY SNEVSRDKEN DRMKRDNSAE  300
RGVEHEFRRT SDIPCKFFAA GNCRNGRHCR FSHHSQPYES PDRKSQDRWA SGRKPDDVNR  360
VFDGHGSKWN DTVIVPDAAK LNEDINRNIC TRDSSSTGWS MNDRLRSSVN NESTTNADPT  420
SSCAAAKNNE KEALQWKPDN AGVSTGLHES RHAEKWLGGM DMSPDWNYTV SSANRTVKEE  480
QSRIPPYSES FNDMSLTTSK QNVNREATGQ INVAASVVPP MIVDKSFFPP KHDLRDDTAT  540
ALQYDDNSAV IKAVSSRADL NISANITPTQ SFDQNVQCAS VFPFSSLNTT GQSQVVIPTV  600
PQGGILKNPQ NSAPSIEANS TTKPEFLDAK TSLVNSRIAP TQNIGSGEQL TNLTNLSASL  660
VQLLGNGQQL PQLYAALNSN NSTGAPSFAN TEALVFPVST SSVQPDPAIV PHKHYDPRQA  720
STESKRPEIS NSPSGVLPNT TMKTSVSYGR SEMQLQNLNP QPLSGALGLD SKQPGDLVEE  780
PKQEMQGLTT LEPNVSSDFS KGKNELGSGD NKKALEENRK VEDGDPVDGV DKEGANDGKK  840
SKDSKGSRAF KFALVEFVKE LLKPTWKEGQ IDKDAYKNIV KKVVDKVTST MQGANIPQTQ  900
EKIDHYLSFS KPKLTKLVQG LDNLYLKMSR SSVSSNVGGR FFRNVWGQPV SKWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RDRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017747.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017748.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017749.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017750.10.0zinc finger CCCH domain-containing protein 38
TrEMBLW9QM160.0W9QM16_9ROSA; Zinc finger CCCH domain-containing protein 38
STRINGXP_010090865.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-14C3H family protein