PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010091496.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 218aa MW: 24954.4 Da PI: 7.1654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010091496.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	32	79	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 ++E++RR++++ +++L +llP++ +sk + + + +A+++IksL+ XP_010091496.1 32 RIIEKNRRNQMKVLYSKLNSLLPPQ---NSKEvQTLPDQVDEAINHIKSLE 79 68********************9...88888**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-10	25	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.02	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.05E-4	28	82	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-9	31	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	32	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0011	32	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGLFVVEDLG ANKQVQAMDQ GSQSSATKIE RRIIEKNRRN QMKVLYSKLN SLLPPQNSKE 60 VQTLPDQVDE AINHIKSLEA RLKKYKEKKK SLLGRKRSYT CANSLESVGS QRSPQIEIHE 120 IGSVIEVVLI TGLDNQFIFY ELIRILHEER ADVVDAKYSV SRDSIFHVVH AEIADSIFGA 180 TKISERLKRF VSGSSSDIEL QPDQWWDDFE IHPELLKF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010091496.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010091496.1	1e-159	transcription factor bHLH162
TrEMBL	W9RA84	1e-158	W9RA84_9ROSA; Uncharacterized protein
STRING	XP_010091496.1	1e-159	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF906	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-27	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21393633