PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010091540.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 423aa    MW: 46011.7 Da    PI: 7.1184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010091540.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l  +v+q+G g W++ +++ g+ R++k+c++rw +yl
   XP_010091540.1 14 KGSWTEEEDQKLFSYVRQHGEGGWRSLPQKAGLLRCGKSCRLRWANYL 61
                     799*****************************99************97 PP
2Myb_DNA-binding431e-1367129146
                      TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++ ++++++ lG+                   +W+tIar++  +Rt++++k++w++
   XP_010091540.1  67 RGEFSPEEEQTIIRLHAVLGNShsssplpvdfiyfrgfigRWSTIARHLY-KRTDNEIKNYWNT 129
                      899******************9***************************9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-23664IPR009057Homeodomain-like
PROSITE profilePS5129423.612965IPR017930Myb domain
SuperFamilySSF466898.98E-2311127IPR009057Homeodomain-like
SMARTSM007175.2E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001679.09E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2165135IPR009057Homeodomain-like
SMARTSM007179.7E-1166133IPR001005SANT/Myb domain
PROSITE profilePS5129411.09766135IPR017930Myb domain
PfamPF002492.8E-1167129IPR001005SANT/Myb domain
CDDcd001672.00E-869131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGKTSCCGKQ GLKKGSWTEE EDQKLFSYVR QHGEGGWRSL PQKAGLLRCG KSCRLRWANY  60
LRPGIRRGEF SPEEEQTIIR LHAVLGNSHS SSPLPVDFIY FRGFIGRWST IARHLYKRTD  120
NEIKNYWNTK LRRRVAEINL ASSSTTCTPT TTAHLSTNPD HNINLSDHQH ESQKPTDPNE  180
ERESGSSEDD NIFSDPGNVI SGTSSTSTTT STQNNNKIAL STSASHLLNN IAKPSSHDGP  240
TSTSNAKTTS STSTTISHDL DQETRSSSSS SSSSARILNK IASKLTLLNL PRVVVDGASI  300
KSPVNGTRRG GSVGEFSLCG GCNSGSPASS TPSNVDPFDQ DVSPGPVLSQ HTGFSAFSGG  360
QLMCQQGMEV LNPMEVFISD DNVKIYDDDL EKMLVTSFPN ATYLFDQQIG SVDNTTTKVS  420
FTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2281351108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010091540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018211.10.0myb-related protein 330 isoform X1
TrEMBLW9QNT20.0W9QNT2_9ROSA; Transcription factor
STRINGXP_010091540.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.17e-56myb domain protein 16